View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_high_49 (Length: 219)
Name: NF5218_high_49
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_high_49 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 49289987 - 49289784
Alignment:
| Q |
1 |
acagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49289987 |
acagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagt |
49289888 |
T |
|
| Q |
101 |
cacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccatctttgttactctctccattat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49289887 |
cacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccatctttgttactctctccattat |
49289788 |
T |
|
| Q |
201 |
atat |
204 |
Q |
| |
|
|||| |
|
|
| T |
49289787 |
atat |
49289784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 49296938 - 49296735
Alignment:
| Q |
1 |
acagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49296938 |
acagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagt |
49296839 |
T |
|
| Q |
101 |
cacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccatctttgttactctctccattat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49296838 |
cacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccatctttgttactctctccattat |
49296739 |
T |
|
| Q |
201 |
atat |
204 |
Q |
| |
|
|||| |
|
|
| T |
49296738 |
atat |
49296735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 49303668 - 49303465
Alignment:
| Q |
1 |
acagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49303668 |
acagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagt |
49303569 |
T |
|
| Q |
101 |
cacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccatctttgttactctctccattat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49303568 |
cacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccatctttgttactctctccattat |
49303469 |
T |
|
| Q |
201 |
atat |
204 |
Q |
| |
|
|||| |
|
|
| T |
49303468 |
atat |
49303465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 199
Target Start/End: Original strand, 6567970 - 6568139
Alignment:
| Q |
30 |
aagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactc |
129 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||| ||| |||||||||| |||||||||| || || || || ||||| |||| | |
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| T |
6567970 |
aagtgcttgttcaatgtctctccctccactcatctcatcaagttcatgaacttctggattcactccaaagtcactgaagagggttttgattgtgtgacac |
6568069 |
T |
|
| Q |
130 |
atgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccatctttgttactctctccatta |
199 |
Q |
| |
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|||||||| ||||||||||||||||||||||| ||| ||||| ||| || ||| || |||||||||| |
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|
| T |
6568070 |
atgcaacaactactcttgctgaatatcaccactgacctctctgatgccaactgtgtcaccctctccatta |
6568139 |
T |
|
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