View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_low_10 (Length: 394)
Name: NF5218_low_10
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 375
Target Start/End: Original strand, 42004125 - 42004485
Alignment:
| Q |
15 |
cacagatagtaaaaattttgtgtgacaaaactaaaatgaatttaacgtaatggaagatcattgagagcataggaaagtacctgttgacttaatcgaatgt |
114 |
Q |
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| T |
42004125 |
cacagatagtaaaaattttgtgtgacaaaactaaaatgagtttaacataatggaagatcattgagagcataggaaagtacctgttgacttaatcgaatgt |
42004224 |
T |
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| Q |
115 |
cggaagattctgagtcaagctgtacattgccagtgtggtcaagattttggcactcttccttgtctttcttcaactgctctggtcctagatgagcatatgc |
214 |
Q |
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| T |
42004225 |
cggaagattctgagtcaagctgtacattgccagtgtggtcaagattttggcactcttccttgtctttcttcaactgctctggtcctagatgagcatatgc |
42004324 |
T |
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| Q |
215 |
cgaaagactaggctggttcttttgttcgtcattttccctgtgtcttttcggagactggctttgaatgaaatcttcgaaccaagaaaatgtttcgggaagt |
314 |
Q |
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| T |
42004325 |
cgaaagactaggctggttcttttgttcgtcattttccctgtgtcttttcggagactggctttgaatgaaatcttcgaaccaagaaaatgtttcgggaagt |
42004424 |
T |
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| Q |
315 |
tgctatgaatccaatagattcagcggcaggtcaatgttatccatctcttcacagtcatcct |
375 |
Q |
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| T |
42004425 |
tgctgtgaatccaatagattcagcggcaggtcaatgttatccatctcttcacagtcatcct |
42004485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 153 - 355
Target Start/End: Original strand, 42013102 - 42013304
Alignment:
| Q |
153 |
tcaagattttggcactcttccttgtctttcttcaactgctctggtcctagatgagcatatgccgaaagactaggctggttcttttgttcgtcattttccc |
252 |
Q |
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| T |
42013102 |
tcaagattttgacactcttcaatatctttcttcaattgctctgctcctaaatgagcatatacggaaagactaggtcgttccatttgctctccgctttccc |
42013201 |
T |
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| Q |
253 |
tgtgtcttttcggagactggctttgaatgaaatcttcgaaccaagaaaatgtttcgggaagttgctatgaatccaatagattcagcggcaggtcaatgtt |
352 |
Q |
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| T |
42013202 |
catcccttttcggagactggctctgaaagaaatctgcgaacaaggaaagtccttccgcaagttgctgtgaatccaataaattctgcgacaggtcaaagtt |
42013301 |
T |
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| Q |
353 |
atc |
355 |
Q |
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||| |
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| T |
42013302 |
atc |
42013304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 142
Target Start/End: Original strand, 42012922 - 42013016
Alignment:
| Q |
46 |
taaaatgaatttaacgtaatggaagatcattgagagcataggaaagtacctgttgacttaatcgaatgtcggaagattctgagtcaagctgtacatt |
142 |
Q |
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| T |
42012922 |
taaaatgaatttaatgtattggaaggtcattgagaaaataggaa--taccagttgacttaatcgaatatcggaaggttgtgagtcaagctctacatt |
42013016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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