View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_low_11 (Length: 384)
Name: NF5218_low_11
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_low_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 8 - 384
Target Start/End: Original strand, 45054777 - 45055153
Alignment:
| Q |
8 |
atcatcacattcaaaattagaatcataatcatcatcactatcatcgagtacaaattccactagattcataatcatatcaaaagttgagctttgactatct |
107 |
Q |
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| T |
45054777 |
atcatcacattcaaaattagaatcataatcatcatcactatcatcgagtacaaattccactagattcataatcatatcaaaagttgagctttgactatct |
45054876 |
T |
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| Q |
108 |
aaatcatcatcttcagttagattgctttcaggggcagacatgaaactatcaataccaagtgaaatctccatttcatggttcaagaaaggtccatcatatg |
207 |
Q |
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| T |
45054877 |
aaatcatcatcttcagtcagattgctttcaggggcagacatgaaactatcaataccaagtgaaatctccatttcatggttcaagaaaggtccatcatatg |
45054976 |
T |
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| Q |
208 |
caattaaactgtcctcatctggcaaacatagaccagggataacagttgaacagtcttctatgctcacattggaagattttagttccgactcctggggaat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
45054977 |
caattaaactgtcctcatctggcaaacatagaccagggataacagttgaacagtcttctattctcacattggaagattttagttccgactcctggtgaat |
45055076 |
T |
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| Q |
308 |
ttggtcatcagggataattggagcaaaccgatcctgcttataacactcccaaagattgtccctctttgcaaatgttc |
384 |
Q |
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| T |
45055077 |
ttggtcatcagggataattggagcaaaccgatcctgcttataacactcccaaagattgtccctctttgcaaatgttc |
45055153 |
T |
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