View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_low_13 (Length: 371)
Name: NF5218_low_13
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_low_13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 40942362 - 40941992
Alignment:
| Q |
1 |
tatattgaatatgaacatgacagatgcccataagttttggaatgttcatgcaacatagaccaaaatagcacatcaagattttattgattgaaacaagttt |
100 |
Q |
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| T |
40942362 |
tatattgaatatgaacatgacagatgcccataagttttggaatgttcatgcaacatagaccaaaatagcacatcaagattttattgattgaaacaagttt |
40942263 |
T |
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| Q |
101 |
taaaattggaatgaaaaagaacatgtccttccacaagcaatgatctaaattaccttcagcacagctgcaacagtgcctgggggcttggaaccgtcaggaa |
200 |
Q |
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| T |
40942262 |
taaaattggaaggaaaaagaacatgtccttccacaagcaatgatctaaattaccttcagcacagctgcaacagtgcctgggggcttggaaccgtcaggaa |
40942163 |
T |
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| Q |
201 |
ctttgaagactgcgttatgcctatgtgggtcaaagggctcatttgtagggtcaaatttttctacaccaaactttttaagtgcctgtaaatataagcagta |
300 |
Q |
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| T |
40942162 |
ctttgaagactgcgttatgcctatgtggatcaaagggctcatttgtagggtcaaatttttctacaccaaactttttaagtgcctgtaaatataagcatta |
40942063 |
T |
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| Q |
301 |
ccttcaaaacaatagcctgaagcaatatattgtccccagagtttcatttttaagcacatgatgtgatgatg |
371 |
Q |
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| T |
40942062 |
ccttcaaaacaatagcctgaagcaatatattgtccccagagtttcatttttaagcacatgatgtgatgatg |
40941992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 288
Target Start/End: Complemental strand, 21507227 - 21507090
Alignment:
| Q |
151 |
taccttcagcacagctgcaacagtgcctgggggcttggaaccgtcaggaactttgaagactgcgttatgcctatgtgggtcaaagggctcatttgtaggg |
250 |
Q |
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| T |
21507227 |
taccttgagaacaactccaacagtgcctggaggcttggaagcatcgggtatttggaagatggcattatgcctgtttggatcaaatggttcatttgtagga |
21507128 |
T |
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| Q |
251 |
tcaaatttttctacaccaaactttttaagtgcctgtaa |
288 |
Q |
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| T |
21507127 |
tcatatttttcaacaccgtgctttttaagtacctgtaa |
21507090 |
T |
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