View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5218_low_14 (Length: 364)
Name: NF5218_low_14
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 2 - 350
Target Start/End: Original strand, 39893255 - 39893603
Alignment:
| Q |
2 |
gtcgagagagatgaagcgtcgttgccattaccacctgaacaagtatccatttatgggataccactccttgctgacgaaagaagtgacgtaattctgttga |
101 |
Q |
| |
|
||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39893255 |
gtcgagaaagttgaagcgtcattgccattaccacctgaacaagtatccatttatgggataccactccttgctgacgaaacaagtgacgtaattctgttga |
39893354 |
T |
|
| Q |
102 |
aatttctgcgtgcaagagattttaaggtcaaagaggctttcacaatgatcaagaacacaattctctggagaaaagaatttggaatagaggagttaatgga |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39893355 |
aatttctgcgtgcaagagattttaaggtcaaagaggctttcacaatgatcaagaacacaattctctggagaaaagaatttggaatagaggagttaatgga |
39893454 |
T |
|
| Q |
202 |
tgagaaactgggtgatgaattggagaaagtggtttacatgcatggatttgataaggaaggtcaccctgtatgttataacatatatggtgaatttcagaac |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39893455 |
tgagaaactgggtgatgaattggagaaagtggtttacatgcatggatttgataaggaaggtcaccctgtatgttataacatatatggtgaatttcagaac |
39893554 |
T |
|
| Q |
302 |
aaggaattgtataacaagactttttctgatgaagagaagagacataatt |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39893555 |
aaggaattgtataacaagactttttctgatgaagagaagagacataatt |
39893603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 343
Target Start/End: Original strand, 44641841 - 44642134
Alignment:
| Q |
56 |
gggataccactccttgctgacgaaagaagtgacgtaattctgttgaaatttctgcgtgcaagagattttaaggtcaaagaggctttcacaatgatcaaga |
155 |
Q |
| |
|
|||||||||||||| || ||||| |||| ||||| ||||||||||| ||||| || || ||||| || || || ||||| || |||||||||||||||| |
|
|
| T |
44641841 |
gggataccactcctcgcagacgatagaaccgacgtgattctgttgaagtttctccgagccagagacttcaaagtgaaagaagcattcacaatgatcaaga |
44641940 |
T |
|
| Q |
156 |
acacaattctctggagaaaagaatttggaat---agaggagttaatggatgagaaactgggtgatgaa---ttggagaaagtggtttacatgcatggatt |
249 |
Q |
| |
|
|||| || | ||||||||||| || ||| |||| |||| | ||||| || | ||||||||| || |||||| |||||||||||||| | |
|
|
| T |
44641941 |
acactatccgttggagaaaagagttcaaaatcgaagagttgttattagatgaaaacttaggtgatgaatatttagagaaaactgtttacatgcatggcta |
44642040 |
T |
|
| Q |
250 |
tgataaggaaggtcaccctgtatgttataacatatatggtgaatttcagaacaaggaattgtataacaagactttttctgatgaagagaagaga |
343 |
Q |
| |
|
|||||| ||||| |||||||| |||||||| || ||||| || ||| | |||||||| | ||||| || || ||||| ||||||||||||||| |
|
|
| T |
44642041 |
tgataaagaaggacaccctgtttgttataatatttatggagagtttgataacaaggaggtttataagaaaacattttcagatgaagagaagaga |
44642134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University