View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_low_17 (Length: 349)
Name: NF5218_low_17
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 7995394 - 7995073
Alignment:
| Q |
18 |
gtttcattggattcatcatcatgcaagaaaatgagtactaatagttttgatgaaatttcacttagacagagattttcttcggcttctaagacgaatttga |
117 |
Q |
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| T |
7995394 |
gtttcattggattcatcatcatgcaagaaaatgagtactaatagttttgatgaaatttcacttagacaaagattttcttcggcttctaagacgaatttga |
7995295 |
T |
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| Q |
118 |
ttccaaacaacaaaagaaccctttctgtaaggagttatcaatcaagccctaatgctaagaagagatttgcatcagcaagaacaagatcaagttctttttc |
217 |
Q |
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| T |
7995294 |
ttccaaacaacaaaagaacactttctgtaaggagttatcaatcaagccctaatgctaagaagagatttgcatcagcaagaacaagatcaagttctttttc |
7995195 |
T |
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| Q |
218 |
aaaatcatcaatttcttcacctagatcaattgataataagcaaaagggtgtttatatcgataatgacgatattgttgccggaccatcttgcttgagtcaa |
317 |
Q |
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| T |
7995194 |
aaaatcatcaatttcttcacctggatcaattgataataagcaaaagggtgtttatatcgataatgacgatattgttgccggaccatcttgcttgagtcaa |
7995095 |
T |
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| Q |
318 |
caactaccttatgatgatgatg |
339 |
Q |
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|||||||||||||||||||||| |
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| T |
7995094 |
caactaccttatgatgatgatg |
7995073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 8023407 - 8023723
Alignment:
| Q |
18 |
gtttcattggattcatcatcatgcaagaaaatgagtactaatagttttgatgaaatttcacttagacagagattttcttcggcttctaagacgaatttga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8023407 |
gtttcattggattcatcatcatgcaagaaaatgagtactaatagttttgatgaaatttcacttagacaaagattttcttcggcttctaagacgaatttga |
8023506 |
T |
|
| Q |
118 |
ttccaaacaacaaaagaaccctttctgtaaggagttatcaatcaagccctaatgctaagaagagatttgcatcagcaagaacaagatcaagttctttttc |
217 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8023507 |
ttccaaacaacaaaagaacactttctgtaaggagttatcaatcaagccctaatgctaagaagagatttgcatcagcaagaacaagatcaagttctttttc |
8023606 |
T |
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| Q |
218 |
aaaatcatcaatttcttcacctagatcaattgataataagcaaaagggtgtttatatcgataatgacgatattgttgccggaccatcttgcttgagtcaa |
317 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8023607 |
aaaatcatcaatttcttcacctggatcaattgataataagcaaaagggtgtttatatcgataatgacgatattgttgccggaccatcttgcttgagtcaa |
8023706 |
T |
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| Q |
318 |
caactaccttatgatga |
334 |
Q |
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||||||||||||||||| |
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| T |
8023707 |
caactaccttatgatga |
8023723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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