View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_low_18 (Length: 344)
Name: NF5218_low_18
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 137 - 337
Target Start/End: Original strand, 48308664 - 48308864
Alignment:
| Q |
137 |
ctgttttcacgaccaaactcctacgttctttcttgataggataagacacggtcttgttacaacaacttggtagcatgtgcttgtaattcatacgtgactt |
236 |
Q |
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| T |
48308664 |
ctgttttcacgaccaaactcctacgttctttcttgataggataagacacggtcctgttacaacaacttggtagcatgtgcttgtaattcatacgtgactt |
48308763 |
T |
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| Q |
237 |
tttattatgaagtgcacaaccacatttacggtggtaaggtctcttttcaaaggtattgtcatagccagatatgcttccttcatgcaatgaccagaataat |
336 |
Q |
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| T |
48308764 |
tttattatgaagtgcacaaccacatttacggtggtaaggtctcttttcaaaggtattgtcatagccagatatgcttccttcatgcaatgaccagaataat |
48308863 |
T |
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| Q |
337 |
c |
337 |
Q |
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| T |
48308864 |
c |
48308864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 48308529 - 48308613
Alignment:
| Q |
2 |
ttctcagaccttgaataatttaaaaatacttgtgatttggctcctcctcctgctcttgaaggtttaccaaactcatcattacttg |
86 |
Q |
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| T |
48308529 |
ttctcagaccttgaataatttaaaaatacttgtgatttggctcctcctcctgctcttgaaggtttaccaaactcatcattacttg |
48308613 |
T |
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