View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_low_19 (Length: 325)
Name: NF5218_low_19
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 52098622 - 52098319
Alignment:
| Q |
16 |
cacttgaaaccagcctcatatctaccaggtggagagacttatggaaccatgttcttattaaacatggaactatggaagatatcactggtgctgttgctga |
115 |
Q |
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| T |
52098622 |
cacttgaaaccagcctcatatctaccaggtggagagacttatggaaccatgttcttgttaaacatggaactatggaagatatcactggtgctgttgctga |
52098523 |
T |
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| Q |
116 |
atttctagccaattttgatgagttagatccgttaaagcgaccatgcaagcttcgatttcactttgctgatgacaatgcactccttgcagctattgcaact |
215 |
Q |
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| T |
52098522 |
atttctagccaattttgatgagttagatccgttaaagcgaccatgcaagcttcgatttcactttgctgatgacaatgcactccttgcagctattgcaact |
52098423 |
T |
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| Q |
216 |
aatagtaagcttcttcttgatttttcttatgggaagnnnnnnnttgaaagaaaatatgaacttcggttcaagctcgataagcaaaacttcacctaccatt |
315 |
Q |
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| T |
52098422 |
aatagtaagcttcttcttgatttttcttatgggatgaaaaaaattgaaagaaaatatgaacttcggttcaagctcgataagcaaaacttcacctaccatt |
52098323 |
T |
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| Q |
316 |
ctgt |
319 |
Q |
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|||| |
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| T |
52098322 |
ctgt |
52098319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 31 - 215
Target Start/End: Complemental strand, 52091504 - 52091320
Alignment:
| Q |
31 |
tcatatctaccaggtggagagacttatggaaccatgttcttattaaacatggaactatggaagatatcactggtgctgttgctgaatttctagccaattt |
130 |
Q |
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| T |
52091504 |
tcatatctactagatggagaaacttgtggaaccaagttcttgtcaaacatggaactatagaagatatcactagtgtttttgctgaatttctaacaaattt |
52091405 |
T |
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| Q |
131 |
tgatgagttagatccgttaaagcgaccatgcaagcttcgatttcactttgctgatgacaatgcactccttgcagctattgcaact |
215 |
Q |
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| T |
52091404 |
tgaagagtgggatccattaaagcgaccgtgaaagcttcaatttcactttgatgatgacaatatactctttgcagctattgcaact |
52091320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 7659467 - 7659517
Alignment:
| Q |
11 |
atcatcacttgaaaccagcctcatatctaccaggtggagagacttatggaa |
61 |
Q |
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||||||| | ||||||| |||||||||||| |||||||||||||||||||| |
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| T |
7659467 |
atcatcaatggaaaccatcctcatatctacaaggtggagagacttatggaa |
7659517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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