View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_low_2 (Length: 743)
Name: NF5218_low_2
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_low_2 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 685; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 20 - 728
Target Start/End: Complemental strand, 24494877 - 24494169
Alignment:
| Q |
20 |
agaacttctgcagatgcggatgctagagctctatattcagcttcagtggatgatcttgcaacggctttttgtttaaaagacttccaagaaattgggttac |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494877 |
agaacttctgcagatgcggatgctagagctctatattcagcttcagtggatgatcttgcaacggctttttgtttaaaagacttccaagaaattgggttac |
24494778 |
T |
|
| Q |
120 |
caccataaaatgtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494777 |
caccataaaatgtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtg |
24494678 |
T |
|
| Q |
220 |
cttcaagtgaagtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggatgtaaagtgtgtagatgatggatgttgcatgaattgtgca |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24494677 |
cttcaagtgaagtccatgaaacatggtggctttgagatatcaaagaagtcttttcaaggctgtaaagtgtgtagatgatggatgttgcatgaattgtgca |
24494578 |
T |
|
| Q |
320 |
agcttatttacagtgtaggctatgtcaggccttgtcatggataaatattgtagagcccctatgacgcttctgtattccgtactatctgctgcacttgcgc |
419 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24494577 |
agcttatttacagtgtaggctatgtcaggccttgtcatggaaaaatattgtagagcccctatgacgcttctgtattccgtactatctgctacacttgcgc |
24494478 |
T |
|
| Q |
420 |
catcagatttagtaagaggagaggatgtagacatcggtgaatggacaatctttgcatctttcatctttgtgcggtcaagtagatcatgaatatatttatg |
519 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494477 |
catcagatttagtaagaggagaggatgtagacatcggtgaatggacaatctttgcatctttcatctttgtgcggtcaagtagatcatgaatatatttatg |
24494378 |
T |
|
| Q |
520 |
ttgactcagaaataatccttgagtagtaggaatgacttcaacaccaagaaagaagtgaatggaacctaagtctttgatggaaaacatagtgcctagtgtt |
619 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494377 |
ttgactcagaaataatccttgagtagtaggaatgacttcaacaccaagaaagaagtgaatggaacctaagtctttgatggaaaacatagtgcctagtgtt |
24494278 |
T |
|
| Q |
620 |
gaaatgcacttagcaattgcatggttgttgttgcctgtaattaaaatatcatcaacatataccaaagtgtagagtttgacatcacctttgagatagatga |
719 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494277 |
gaaatgcacttagcaattgcatggttgttgttgccagtaattaaaatatcatcaacatataccaaagtgtagagtttgacatcacctttgagatagatga |
24494178 |
T |
|
| Q |
720 |
atgatgatg |
728 |
Q |
| |
|
|| |||||| |
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| T |
24494177 |
ataatgatg |
24494169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 564; Significance: 0; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 121 - 728
Target Start/End: Complemental strand, 94126 - 93519
Alignment:
| Q |
121 |
accataaaatgtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgc |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
94126 |
accataaaatgtaacatgtgcagaggtggatgtataatcatctcgatttccagcccaatcggcatcactgaatgcatatagattttgagaagaagtgcac |
94027 |
T |
|
| Q |
221 |
ttcaagtgaagtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggatgtaaagtgtgtagatgatggatgttgcatgaattgtgcaa |
320 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
94026 |
ttcaagtgaagtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggttgtaaagtgtgtagatgatggatattgcatgaactgtgcaa |
93927 |
T |
|
| Q |
321 |
gcttatttacagtgtaggctatgtcaggccttgtcatggataaatattgtagagcccctatgacgcttctgtattccgtactatctgctgcacttgcgcc |
420 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
93926 |
acttatttacagtgtaggctatgtcaggccttgtcatggacaaatattgtagagcccctatgacgcttctgtattccgtactatctgcttcacttgcgcc |
93827 |
T |
|
| Q |
421 |
atcagatttagtaagaggagaggatgtagacatcggtgaatggacaatctttgcatctttcatctttgtgcggtcaagtagatcatgaatatatttatgt |
520 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93826 |
atcagatttagtaagaggagaggatgtagacatcggtgaatggacaatctttgcatctttcatctttgtgcggtcaagtagatcatgaatatatttatgt |
93727 |
T |
|
| Q |
521 |
tgactcagaaataatccttgagtagtaggaatgacttcaacaccaagaaagaagtgaatggaacctaagtctttgatggaaaacatagtgcctagtgttg |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93726 |
tgactcagaaataatccttgagtagtaggaatgacttcaacaccaagaaagaagtgaatggaacctaagtctttgatggaaaacatagtgcctagtgttg |
93627 |
T |
|
| Q |
621 |
aaatgcacttagcaattgcatggttgttgttgcctgtaattaaaatatcatcaacatataccaaagtgtagagtttgacatcacctttgagatagatgaa |
720 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93626 |
aaatgcacttagcaattgcatggttgttgttgcctgtaattaaaatatcatcaacatataccaaagtgtagagtttgacatcacctttgagatagatgaa |
93527 |
T |
|
| Q |
721 |
tgatgatg |
728 |
Q |
| |
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| |||||| |
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| T |
93526 |
taatgatg |
93519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 86342 - 86237
Alignment:
| Q |
20 |
agaacttctgcagatgcggatgctagagctctatattcagcttcagtggatgatcttgcaacggctttttgtttaaaagacttccaagaaattgggttac |
119 |
Q |
| |
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||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
86342 |
agaacttctgcggatgcgtatgctagagctctgtattcagcttcagtggatgatcttgcaacaaatttttgtttaaaagacttccaagaaattgggttac |
86243 |
T |
|
| Q |
120 |
caccat |
125 |
Q |
| |
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|||||| |
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|
| T |
86242 |
caccat |
86237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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