View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_low_22 (Length: 302)
Name: NF5218_low_22
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_low_22 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 29009886 - 29009605
Alignment:
| Q |
20 |
agaccatctgctttgataggcatttgtatgataaactcttctgcttctttcacacggcctgaccgaccaagaagatccaccacccatgtgtaatgctcta |
119 |
Q |
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| T |
29009886 |
agaccatctgctttgataggcgtttgtatgataaactcttctgcttctttcacacggcctgaccgaccaagaagatccaccacccatgtgtaatgctcta |
29009787 |
T |
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| Q |
120 |
ttgttggggttactctgtaatttatctgcattgggtgaaaaaattccaaaccttcgtcaactagctacaggcagaaagaacagctacaaaagtagcagca |
219 |
Q |
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| T |
29009786 |
ttgttggggtaactctgtaatttatctgcattgagtgaaaaaattccaaaccttcgtcaactagctacaggcagaaagaacagctacaaaagtagcagca |
29009687 |
T |
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| Q |
220 |
tttggaacaacgcgttgatctaatctaacattgagcggaagcgtgaaatcgcctcagatccacatccatggtatgcataacca |
302 |
Q |
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| T |
29009686 |
tttggaacaacgtgttgatctaatctaacattgagcggaagcgtgaaatcgcctcagat-cacatccatggtatgcataacca |
29009605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 22 - 302
Target Start/End: Original strand, 34145509 - 34145794
Alignment:
| Q |
22 |
accatctgctttgataggcatttgtatgataaactcttctgcttctttcacacggcctgaccgaccaagaagatccaccacccatgtgtaatgctctatt |
121 |
Q |
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| T |
34145509 |
accatctgctttgataggcatttgtatgataaactcttctgcttctttcacacggcctgaccgaccaagaagatccaccacgcatgtgtaatgctctatt |
34145608 |
T |
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| Q |
122 |
gttggggttactctgtaatttatctgcattgggtgaaaaaattccaaaccttcgtcaacta----------gctacaggcagaaagaacagctacaaaag |
211 |
Q |
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| T |
34145609 |
gttggggttattctgtagtttatctgcattgagtgaaaaaatttcaaaccttcgtcaactaggccagcatggctacaggcggaaagaacagctacaaaag |
34145708 |
T |
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| Q |
212 |
tagcagcatttggaacaacgcgttgatctaatctaacattgagcggaagcgtgaaatcgcctcagatccacatccatggtatgcataacca |
302 |
Q |
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| T |
34145709 |
tagcagcatttggaacaacaccttg-----atctaacattgagcggaagcgtgaaatcgcctcagatccgcatccatggtatgcataacca |
34145794 |
T |
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