View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_low_24 (Length: 273)
Name: NF5218_low_24
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 256
Target Start/End: Original strand, 6682208 - 6682454
Alignment:
| Q |
10 |
aacaatatttaggctcctaactctgtcatatgaagtatatcaaaatcaaacaaacaaattaacagtttggtgctggtacttttaccactttggctctcag |
109 |
Q |
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| T |
6682208 |
aacaatatttaggctcctaactctgtcatatgaagtatatcaaaatcaaacaaacaaattaacagtttggtgctggtacttttaccactttggctctcag |
6682307 |
T |
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| Q |
110 |
attcactattttgtccgggacatgagaaatctgagcaaatcttctcctgtaaagcacttgcagttgcattgttctaagagtggacaatcccatattttta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
6682308 |
cctcactattttgtccgggacatgagaaatctgagcaaatcttctcctgtaaagcacttgcagttgcattgtcctaagagtggacaatcccattttttta |
6682407 |
T |
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| Q |
210 |
gttcgaccaagttattaaggcgagatattcctcatggcaacgacttc |
256 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6682408 |
gttcgaccaagttattaaggcgagatattcctcgtggcaacgacttc |
6682454 |
T |
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