View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_low_25 (Length: 270)
Name: NF5218_low_25
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_low_25 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 270
Target Start/End: Complemental strand, 39211524 - 39211264
Alignment:
| Q |
10 |
ataatactataaagcatagtcataagaaagtataatgtacttaagtcaatttcactatgtctaattgaatcttgacaacagatgttgcagtggaaaaact |
109 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39211524 |
ataatacaataaagcatagtcataagaaagtataatgtacttaagtcaatttcactatgtctaattgaatcttgacaacagatgttgcagtggaaaaact |
39211425 |
T |
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| Q |
110 |
atatagctgatatcataaatttgtttcannnnnnnctacttaaattggatgtaacagctgcagggcaattaacacatgttcttaattgtaacagatgcag |
209 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39211424 |
atatagctgatagcataaatttgtttcatttttttctacttaaattggatgtaacagctgcagggcaattgacacatgttcttaattgtaacagatgcag |
39211325 |
T |
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| Q |
210 |
gatgaaaattgatagcttatgaagtacataactgaagcactgtttttcttatatgcaaaga |
270 |
Q |
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| T |
39211324 |
gatgaaaattgatagcttatgaagtacataactgaagcactgtttttcttatatgcaaaga |
39211264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 270
Target Start/End: Original strand, 27509416 - 27509676
Alignment:
| Q |
10 |
ataatactataaagcatagtcataagaaagtataatgtacttaagtcaatttcactatgtctaattgaatcttgacaacagatgttgcagtggaaaaact |
109 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27509416 |
ataatacaataaagcatagtcataagaaagtataatgtactagagtcaatttcactatgtctaattgaatcttgacaacagatgttgcaggggaaaaact |
27509515 |
T |
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| Q |
110 |
atatagctgatatcataaatttgtttcannnnnnnctacttaaattggatgtaacagctgcagggcaattaacacatgttcttaattgtaacagatgcag |
209 |
Q |
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| T |
27509516 |
atataactgatagtataaatttgtttcatttttttctacttaaattggatgtaacagctgcagggcaattgacacatgttcttaattgtaacagatgcag |
27509615 |
T |
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| Q |
210 |
gatgaaaattgatagcttatgaagtacataactgaagcactgtttttcttatatgcaaaga |
270 |
Q |
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| T |
27509616 |
gatgaaaattgatagcttatgaagtacataactgaagcactatttttcttatatgcaaaga |
27509676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 11 - 270
Target Start/End: Complemental strand, 27271994 - 27271731
Alignment:
| Q |
11 |
taatactataaagcatagtcataagaaagtataatgtacttaagtcaatttcactatgtctaattgaatcttgacaacagatgttgcagtggaaaaacta |
110 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27271994 |
taatacaataaagcatagtcataagaaagtataatgtatttaagtctatttcactgtgtctaattgaatcttcacaacagatgttgcagtggaaaaacta |
27271895 |
T |
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| Q |
111 |
tatagctgatatcataaatttgtttcannnnnnnctacttaaattggatgtaacagctgcagggca--attaaca-catgttcttaattgtaacagatgc |
207 |
Q |
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||||||||||| |||||| ||||||| |||| ||||||||||||||||||||||| | | || || ||| ||||||||||||||||||| |
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| T |
27271894 |
tatagctgatagtataaatatgtttca-ttttttctacctaaattggatgtaacagctgcagtgaatgtttgtcatcatcatcttaattgtaacagatgc |
27271796 |
T |
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| Q |
208 |
agga--tgaaaattgatagcttatgaagtacataactgaagcactgtttttcttatatgcaaaga |
270 |
Q |
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| || ||||||||||||||||| ||| ||||||| ||| || ||| |||||| |||||||||| |
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| T |
27271795 |
aagaactgaaaattgatagcttaagaaatacataattgaggcgctgagtttcttgtatgcaaaga |
27271731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 270
Target Start/End: Original strand, 29706863 - 29707126
Alignment:
| Q |
11 |
taatactataaagcatagtcataagaaagtataatgtacttaagtcaatttcactatgtctaattgaatcttgacaacagatgttgcagtggaaaaacta |
110 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29706863 |
taatacaataaagcatagtcataagaaagtataatgtatttaagtctatttcactgtgtctaattgaatcttcacaacagatgttgcagtggaaaaacta |
29706962 |
T |
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| Q |
111 |
tatagctgatatcataaatttgtttcannnnnnnctacttaaattggatgtaacagctgcagggca--attaaca-catgttcttaattgtaacagatgc |
207 |
Q |
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||||||||||| |||||| ||||| | |||| |||||| ||||||||| |||||| | | || || ||| |||||||||||||||||||| |
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| T |
29706963 |
tatagctgatagtataaatatgttt-aattttttctacctaaattagatgtaacaactgcagtgaatgtttttcatcatcttcttaattgtaacagatgc |
29707061 |
T |
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| Q |
208 |
agga--tgaaaattgatagcttatgaagtacataactgaagcactgtttttcttatatgcaaaga |
270 |
Q |
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| || ||||||||||||||||| ||||||||||| ||| || || |||||| |||||||||| |
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| T |
29707062 |
aagaactgaaaattgatagcttaagaagtacataattgaggcgctaagtttcttgtatgcaaaga |
29707126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 10 - 270
Target Start/End: Original strand, 42092950 - 42093215
Alignment:
| Q |
10 |
ataatactataaagcatagtcataagaaagtataatgtacttaagtcaatttcactatgtctaattgaatcttgacaacagatgttgcagtggaaaaact |
109 |
Q |
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||||||| ||||| ||||||||||||| ||||||| || ||||||| |||||||||||| ||||||||||||||||||| || ||||||||||||||| |
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| T |
42092950 |
ataatacagtaaagtatagtcataagaaggtataatatatttaagtctatttcactatgtttaattgaatcttgacaacatgtgctgcagtggaaaaact |
42093049 |
T |
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| Q |
110 |
atatagctgatatcataaatttgtttca-nnnnnnnctacttaaattggatgtaacagctgcagggcaatt--aacacatgttcttaattgtaacagatg |
206 |
Q |
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||| ||||||| |||||||||||||| ||||| ||||||||||||||||| |||||||||| || ||||| | ||||||||||| ||| |
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| T |
42093050 |
ataaagctgatggtataaatttgtttcatttttttcctactgaaattggatgtaacagccacagggcaattgatactcatgtgcctaattgtaacatatg |
42093149 |
T |
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| Q |
207 |
cagga--tgaaaattgatagcttatgaagtacataactgaagcactgtttttcttatatgcaaaga |
270 |
Q |
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|| || | |||||||||||| | |||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
42093150 |
catgaactcaaaattgatagcatttgaagtacataattgaagcactatttttcttatatgcaaaga |
42093215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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