View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_low_26 (Length: 269)
Name: NF5218_low_26
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 35071925 - 35071666
Alignment:
| Q |
18 |
ctattgaagatggtgttcttactgttactgtccctaaggaagaggttaccaaccctgatcgtttgaccaatcagagttcacagtgagagtaattatgaaa |
117 |
Q |
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| T |
35071925 |
ctattgaagatggtgttcttactgttactgtccctaaggaagaggttaccaaccctgatcgtttgaccaatcagagttcacagtgagagtaataatgaac |
35071826 |
T |
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| Q |
118 |
agtt---------------gaaatttgaatccaaaaatgttccattttggctatttgtttttgtatgttagtgattaggaaatgctgttacaaataagaa |
202 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071825 |
agttctgttcgtgtggattgaaatttgaatccaaaaatgttccattttggctatttgtttttgtatgttagtgattaggaaatgctgttacaaataagaa |
35071726 |
T |
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| Q |
203 |
acgtgtgtgtatcataagcattaatacgggttagataaagcacctacgtgatgatgtcca |
262 |
Q |
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| T |
35071725 |
acgtgtgtgtatcataagcattaatacgagttagataaagcacctacgtgttgatgtcca |
35071666 |
T |
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