View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_low_27 (Length: 266)
Name: NF5218_low_27
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_low_27 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 45643432 - 45643675
Alignment:
| Q |
17 |
tggtttgttgccagagtcggcaatgccatagtgatagctaaaaagaagcataaaatcaaagcattagagaaagccattttaatcaaggaggctacgagaa |
116 |
Q |
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| T |
45643432 |
tggtttgttgccagagtcggcaatggcatagtgatagctaaaaagaagcataaaaccaaagcattagagaaagccattttaatcaaggaagctacgagga |
45643531 |
T |
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| Q |
117 |
tcttgtttgagaattgagatataatgggttagctttatgtaattgcaagcaagaatgggattgggagttgttagcttatatatgatacgtagaaagagag |
216 |
Q |
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| T |
45643532 |
tcttatttgagaattgag--ataatggtttagctttatgtaattgcaagcaagaatgggattgggagttgtta----atatatggtacgtagaaagagag |
45643625 |
T |
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| Q |
217 |
aggagagatttttgaattggggaaatctaaagtgagagttcattagactt |
266 |
Q |
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| T |
45643626 |
aggagagatttttgaattggggaaatctaaagtgagagttcattagactt |
45643675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 149 - 248
Target Start/End: Complemental strand, 45702718 - 45702619
Alignment:
| Q |
149 |
ctttatgtaattgcaagcaa-gaatgggattgggagttgttagcttatatatgatacgtagaaagagagaggagagatttttgaattggggaaatctaaa |
247 |
Q |
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| T |
45702718 |
ctttatataattgcaagcaaagaatgggattgggagttgttagcttatatatggtacgtagaaagagagaggagaga-ttttgaattggggaaatctaaa |
45702620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 45702898 - 45702816
Alignment:
| Q |
17 |
tggtttgttgccagagtcggcaatgccatagtgatagctaaaaagaagcataaaatcaaagcattagagaaagccattttaat |
99 |
Q |
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| T |
45702898 |
tggtttgttgccagagtcggcaatggcatagtgatcgctaaaaagaagcataaaaccaaagccttaaagaatgtcattttaat |
45702816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 45886710 - 45886628
Alignment:
| Q |
17 |
tggtttgttgccagagtcggcaatgccatagtgatagctaaaaagaagcataaaatcaaagcattagagaaagccattttaat |
99 |
Q |
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| T |
45886710 |
tggtttgttgccagagtcggcaatggcatagtgatcgctaaaaagaagcataaaaccaaagccttaaagaatgtcattttaat |
45886628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 45650751 - 45650815
Alignment:
| Q |
23 |
gttgccagagtcggcaatgccatagtgatagctaaaaagaagcataaaatcaaagcattagagaa |
87 |
Q |
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| T |
45650751 |
gttgcaagagttggcactgccacattgatcactaaaaagaagcctaaaatcaaaggattagagaa |
45650815 |
T |
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