View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5218_low_28 (Length: 257)
Name: NF5218_low_28
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_low_28 |
 | |
|
| [»] scaffold0208 (2 HSPs) |
| | |
|
| [»] scaffold0363 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 32030740 - 32030956
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32030740 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
32030839 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32030840 |
gcgtgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
32030939 |
T |
|
| Q |
220 |
ttatatacgttatttcc |
236 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
32030940 |
ttatatacgttatttcc |
32030956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 8652082 - 8652296
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8652082 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
8652181 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
8652182 |
gcgtgagcataaactctcttgttctctttaataatccttatggttgc-cttttcaacaattcaaactttgaattgctcaaatatctgccaaacaatctta |
8652280 |
T |
|
| Q |
220 |
ttatatacgttatttc |
235 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
8652281 |
ttatatacgttatttc |
8652296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 21771854 - 21772068
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21771854 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtgtgacacataaatgatctccaaattgccagatctctt |
21771953 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
21771954 |
gcgtgagcataagctctcttgttctctttaataatctttatggttgc-cttttcaacaattcaaactttgaattgctcaaatatctgccaaacaatctta |
21772052 |
T |
|
| Q |
220 |
ttatatacgttatttc |
235 |
Q |
| |
|
|||||| | ||||||| |
|
|
| T |
21772053 |
ttatatgcattatttc |
21772068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 21192146 - 21192360
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21192146 |
aatacttacagtcatttcttgagttaggatgcgtattatctacttacatccaaaagccaaagtctgacacataaatgatctcaaaattgtcagatctctt |
21192245 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
|||| | ||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
21192246 |
gcataaacataaactctcttgttctctttaataatccttatggttgc-cttttcaacaattcaaactttgaattgctcaaatatctgccaaacaatctta |
21192344 |
T |
|
| Q |
220 |
ttatatacgttatttc |
235 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
21192345 |
ttatatacgttatttc |
21192360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 17580517 - 17580303
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
17580517 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctctaaattgttagatctctg |
17580418 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
17580417 |
atgtgagcataagctctcttgttctctttaataa-ccttatggttgc-tttttcaacaattcaaactttgaattgctcaaatatctgccaaacaatctta |
17580320 |
T |
|
| Q |
220 |
ttatatacgttatttcc |
236 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
17580319 |
ttatatacgctatttcc |
17580303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 6102390 - 6102174
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagc-caaagtctgacacataaatgatctccaaattgtcagatctct |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6102390 |
aatacttacagtcatttattgagttaggatgtgtattatctatttacatccaaaaattcagagtctgacacataaatgatctccaaattgtcagatctct |
6102291 |
T |
|
| Q |
119 |
tgcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctt |
218 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||| ||||| |
|
|
| T |
6102290 |
tgcgtgaccataagctctcttgttctctttaataatctttatggttgct-ttttcaacaattcaaactttgaattgctcacatatctgccaaacaatctt |
6102192 |
T |
|
| Q |
219 |
attatatacgttatttcc |
236 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
6102191 |
attatatacgctatttcc |
6102174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 13006574 - 13006359
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctact--tacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctc |
117 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||| ||| || |||| |||| || ||||| ||||| |||||| | |||||||||||||||| |
|
|
| T |
13006574 |
aatacttacagttgtttcctgagttaggatgtgtattatatacacatatatccgaaagtcagagtctaacacaataatgatattcaaattgtcagatctc |
13006475 |
T |
|
| Q |
118 |
ttgcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatct |
217 |
Q |
| |
|
| |||||||||| |||| ||||||||||||| |||| |||||||||| ||||||||||||| || ||||||||||| |||||| || ||||| |||| |
|
|
| T |
13006474 |
tgatatgagcataaactcttttgttctctttaaaaatccttatggttgc-cttttcaacaattccaattttgaattgctgaagtatatgccaaacaatct |
13006376 |
T |
|
| Q |
218 |
tattatatacgttattt |
234 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
13006375 |
gattatatatgttattt |
13006359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 12437465 - 12437248
Alignment:
| Q |
17 |
atgaatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatct |
116 |
Q |
| |
|
|||||||||||| |||| ||||| | |||||||||||| ||| || | ||||||||||| |||||| ||||||| ||||||||||||||| || ||||| |
|
|
| T |
12437465 |
atgaatacttacggtcaattcttaaattaggatgtgtaatatatattgacatccaaaagtcaaagtttgacacactaatgatctccaaattttctgatct |
12437366 |
T |
|
| Q |
117 |
cttgcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatc |
216 |
Q |
| |
|
|| | |||| || || ||||||||||||| ||||| |||| ||| | |||||||||||||||| |||||||| ||||||||| || ||| ||| |
|
|
| T |
12437365 |
ctaatacaagcacaaattcctttgttctctttaa-aatctgtatgtttg-tcttttcaacaattcaaattttgaattactcaagtatttgctaaataatc |
12437268 |
T |
|
| Q |
217 |
ttattatatacgttatttcc |
236 |
Q |
| |
|
| ||||||||| ||||||| |
|
|
| T |
12437267 |
tgattatatacactatttcc |
12437248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 10239485 - 10239699
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10239485 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
10239584 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
10239585 |
gcatgagcataagctctcttgttctctttaataatccttatggttgc-cttttcaacaattcaaactttgaattgctcaaatatctgccaaacaatctta |
10239683 |
T |
|
| Q |
220 |
ttatatacgttatttc |
235 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
10239684 |
ttatatacgttatttc |
10239699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 38450342 - 38450556
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38450342 |
aatacttacaatcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacatataaatgatctccaaattgtcagatctctt |
38450441 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
38450442 |
gcgtgaacataagctctcttgttctctttaataatccttatggttgc-cttttcaacaattcaaactttgaattgctcaaatatctgccaaacaatctta |
38450540 |
T |
|
| Q |
220 |
ttatatacgttatttc |
235 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
38450541 |
ttatatacgttatttc |
38450556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 11841004 - 11841218
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11841004 |
aatacttacagtcatatcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
11841103 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
|| | | | ||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
11841104 |
gctttatcttaatctctcttgttctctttaataattcttatggttgc-cttttcaacaattcaaactttgaattgctcaaatatctgccaaacaatctta |
11841202 |
T |
|
| Q |
220 |
ttatatacgttatttc |
235 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
11841203 |
ttatatacattatttc |
11841218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 42192499 - 42192705
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42192499 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatttctg |
42192598 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| || |||||| ||||| || ||| |
|
|
| T |
42192599 |
atgtgagcataagctctcttgttctctttaataatccttatggttgc-tttttaaacaattcaaactttgaattgctaaaatatctgccaaacaatttta |
42192697 |
T |
|
| Q |
220 |
ttatatac |
227 |
Q |
| |
|
|||||||| |
|
|
| T |
42192698 |
ttatatac |
42192705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 24644749 - 24644890
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24644749 |
aatacttacagtcatttcttgaattaggatgtgtattatctacttacatccaaaaaccaaagtctgacacataaatgatctccaaattatcagatctctt |
24644848 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatg |
161 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24644849 |
gcgtgagcataagctctcttgttctctttaataatccttatg |
24644890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 10761924 - 10762131
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatcc-aaaagccaaagtctgacacataaatgatctccaaattgtcagatctct |
118 |
Q |
| |
|
|||||||| | |||||||||||||||| ||||||||||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
10761924 |
aatacttataatcatttcttgagttagaatgtgtattatctacttacatccaaaaaaccatagtctgacacactaatgatctccaaattgtcagatttct |
10762023 |
T |
|
| Q |
119 |
tgcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctt |
218 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||| |||||| ||||| || || |
|
|
| T |
10762024 |
gatgcgagcataagctgtcttgttctctttaataatcattatggttg-ttttttaaacaattcaaactttgaattgctcaaatatctgccaaacaatttt |
10762122 |
T |
|
| Q |
219 |
attatatac |
227 |
Q |
| |
|
||||||||| |
|
|
| T |
10762123 |
attatatac |
10762131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 49156572 - 49156360
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
|||||||||||| ||||| |||||| ||||||||||||| ||| |||||||||||| | ||||||||||| ||||||||||||||| |||||| ||| |
|
|
| T |
49156572 |
aatacttacagtaatttcctgagtt-ggatgtgtattatatacaaacatccaaaagcaagagtctgacacactaatgatctccaaattatcagatttcta |
49156474 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
|||| | | ||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
49156473 |
atgtgagtaataactctcttgttctctttaataatccttatggttg-tcttttcaacaattcaaactttgaattgctcaagtatctgccaaacaatctta |
49156375 |
T |
|
| Q |
220 |
ttatatacgttattt |
234 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
49156374 |
ttatatacattattt |
49156360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 10734625 - 10734839
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10734625 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagaactctt |
10734724 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
10734725 |
gcgtgagcataagctctcttgttctctttaataacccttatggttgc-cttttcaacaattcaaactttgaattgctcaaatatctgtcaaacaatctta |
10734823 |
T |
|
| Q |
220 |
ttatatacgttatttc |
235 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
10734824 |
ttatatacgttatttc |
10734839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 10948394 - 10948608
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10948394 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagaactctt |
10948493 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
10948494 |
gcgtgagcataagctctcttgttctctttaataacccttatggttgc-cttttcaacaattcaaactttgaattgctcaaatatctgtcaaacaatctta |
10948592 |
T |
|
| Q |
220 |
ttatatacgttatttc |
235 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
10948593 |
ttatatacgttatttc |
10948608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 33 - 236
Target Start/End: Original strand, 26958106 - 26958308
Alignment:
| Q |
33 |
atttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctcttgcatgagcataag |
132 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| || ||||||||||| ||||||||| |||||||||||| ||| |||||||||| |
|
|
| T |
26958106 |
atttcttgagttagaatgtgtattatctacttacatccaaaagtcatagtctgacacactaatgatctcgaaattgtcagatttctgatgtgagcataag |
26958205 |
T |
|
| Q |
133 |
ctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatcttattatatacgttat |
232 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||||| || ||||||||||||||||| |||||| ||||||||||||||| ||| |
|
|
| T |
26958206 |
ctctcttgttctctttaataatccttatggttgc-cttttcaacaattcaaaattggaattgctcaagtatctatcaaacaatcttattatatacgctat |
26958304 |
T |
|
| Q |
233 |
ttcc |
236 |
Q |
| |
|
|||| |
|
|
| T |
26958305 |
ttcc |
26958308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 48166072 - 48165860
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
|||||||| ||| ||||| |||||||| ||||||||||| ||| |||||||||||| | ||| ||| ||| || ||||||||||||||||||| ||| |
|
|
| T |
48166072 |
aatacttagagtaatttcctgagttag-atgtgtattatatacaaacatccaaaagcaagagtttgagacactaacgatctccaaattgtcagatttcta |
48165974 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
|||| | | |||||||||||||||||||||| |||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48165973 |
atgtgagtaataattctcttgttctctttaataatccttatggttgcctttt-caagaattcaaactttgaattgctcaagtatctgtcaaacaatctta |
48165875 |
T |
|
| Q |
220 |
ttatatacgttattt |
234 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
48165874 |
ttatatacattattt |
48165860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 41296164 - 41295950
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41296164 |
aatacttacagttatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
41296065 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
41296064 |
ccgtgagcataagctctcttgttctctttaataattcttatggttgc-cttttcaacaattcaaactttgaattgctcaaatatctgccaaacaatctta |
41295966 |
T |
|
| Q |
220 |
ttatatacgttatttc |
235 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
41295965 |
ttatatatgttatttc |
41295950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 19060988 - 19061196
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||| | | |
|
|
| T |
19060988 |
aatacttagagtcatttattgagttaggatgtgtattatctacttacatccaaaagccattgtatgacacataaatgatctccaaattgtgagatatatc |
19061087 |
T |
|
| Q |
120 |
gca--tgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatct |
217 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||| || ||||||||||||||||||||| ||||| |||| |
|
|
| T |
19061088 |
tcatgtgagcataaactctcttgttctctttaataatctttatggttgc-attttcaataattctaagtttgaattgctcaagtatctgacaaacaatct |
19061186 |
T |
|
| Q |
218 |
tattatatac |
227 |
Q |
| |
|
|||||||||| |
|
|
| T |
19061187 |
tattatatac |
19061196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 12687447 - 12687654
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaag-ccaaagtctgacacataaatgatctccaaattgtcagatctct |
118 |
Q |
| |
|
|||||||| |||||||||||||||||| |||| |||||||||||||||||||||| ||| ||||||||| | |||||||||||||||||||||| ||| |
|
|
| T |
12687447 |
aatacttatagtcatttcttgagttagaatgtctattatctacttacatccaaaaaaccatagtctgacaaactaatgatctccaaattgtcagatttct |
12687546 |
T |
|
| Q |
119 |
tgcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| |||||| ||||| || || |
|
|
| T |
12687547 |
gatgtgagcataagctctcttgttctctttaataatccttatggttgc-tttttaaacaattcaaactttgaattgctcaaatatctgccaaacaatttt |
12687645 |
T |
|
| Q |
219 |
attatatac |
227 |
Q |
| |
|
|| |||||| |
|
|
| T |
12687646 |
atcatatac |
12687654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 32095480 - 32095687
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatcc-aaaagccaaagtctgacacataaatgatctccaaattgtcagatctct |
118 |
Q |
| |
|
|||||||| |||||||||||||||||| |||| |||||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
32095480 |
aatacttatagtcatttcttgagttagaatgtctattatctacttacatccaaaaaaccatagtctgacacactaatgatctccaaattgtcagatttct |
32095579 |
T |
|
| Q |
119 |
tgcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctt |
218 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||| |||||||||| ||||| |||||||||||||||||||||||||| |||||| ||||| || || |
|
|
| T |
32095580 |
gatgtgagcataagctctcttattctctttaatgatccttatggttgc-tttttaaacaattcaaactttgaattgctcaaatatctgccaaacaatttt |
32095678 |
T |
|
| Q |
219 |
attatatac |
227 |
Q |
| |
|
||||||||| |
|
|
| T |
32095679 |
attatatac |
32095687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 28526652 - 28526864
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
|||||||||||| ||||| |||||| ||||||||||||| ||| |||||||||||| | ||||||||||| ||||||||||||||| |||||| ||| |
|
|
| T |
28526652 |
aatacttacagtaatttcctgagtt-ggatgtgtattatatacaaacatccaaaagcaagagtctgacacactaatgatctccaaattatcagatttcta |
28526750 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
|||| | | ||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
28526751 |
atgtgagtaataactctcttgttctctttaataatccttatggttg-tcttttcaacaattcaaactttgaattgctcaagtatctgccaaacaatctta |
28526849 |
T |
|
| Q |
220 |
ttatatacgttattt |
234 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
28526850 |
ttatatacattattt |
28526864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 227
Target Start/End: Complemental strand, 30771156 - 30770974
Alignment:
| Q |
42 |
gttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctcttgcatgagcataagctctcttgt |
141 |
Q |
| |
|
|||||||||| |||||| ||| ||||||||||| || | ||| ||||| ||||| |||||||||| ||||||||| || ||||||| ||||||||| |
|
|
| T |
30771156 |
gttaggatgtctattatatacaaacatccaaaagtcagattctaacacactaatgacctccaaattgccagatctcta--atcagcataaactctcttgt |
30771059 |
T |
|
| Q |
142 |
tctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatcttattatatac |
227 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||||| |||||||||||||||||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
30771058 |
tctctttaataatccttatggctgcctttttca-caattcaaactttgaattgctcaagtatttgccaaacaatcttattatatac |
30770974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 26509045 - 26508830
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
|||| |||||| | |||| ||||||||||||| |||||| ||| ||||| ||||| || ||||| ||||| ||||| ||| ||||||| |||| ||| |
|
|
| T |
26509045 |
aatatttacagccgtttcctgagttaggatgtctattatttacagacatctaaaagtcatagtctaacacactaatgaactctaaattgttagatttctg |
26508946 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
| |||| |||| ||||||| |||||||||||||| |||||||||| |||| |||||||||||| ||||||||||||||||||||| ||||| || | | |
|
|
| T |
26508945 |
gtgtgagtataaactctcttattctctttaataattcttatggttgcctttt-caacaattcaaattttgaattgctcaagtatctgccaaacaatatga |
26508847 |
T |
|
| Q |
220 |
ttatatacgttatttcc |
236 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
26508846 |
ttatataagttatttcc |
26508830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 13460921 - 13460715
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
13460921 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatttctg |
13460822 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| || |||||| ||||| || ||| |
|
|
| T |
13460821 |
atgtgagcataagctctcttgttctctttaataatccttatggttgc-tttttaaacaattcaaactttgaattgctaaaatatctgccaaacaatttta |
13460723 |
T |
|
| Q |
220 |
ttatatac |
227 |
Q |
| |
|
|||||||| |
|
|
| T |
13460722 |
ttatatac |
13460715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 35085946 - 35086158
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
|||||||||||| ||||| |||||| ||||| ||||||| ||| |||||||||||| | ||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
35085946 |
aatacttacagtaatttcctgagtt-ggatgggtattatatacaaacatccaaaagcaagagtctgacacactaatgatctccaaattgtcagatttcta |
35086044 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
|||| | | ||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35086045 |
atgtgagtaataactctcttgttctctttaataatccttatggttgcctttt-caacaattcaaactttgaattgctcaagtatctgtcaaacaatctta |
35086143 |
T |
|
| Q |
220 |
ttatatacgttattt |
234 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
35086144 |
ttatatacgttattt |
35086158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 35440645 - 35440865
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagc-caaagtctgacacataaatgatctccaaattgtcagatctct |
118 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||| | | |
|
|
| T |
35440645 |
aatacttatagtcatttcttgagttagaatgtgtattatctacctacatccaaaaaatcatagtctgacacactaatgatctccaaattgtcagattttt |
35440744 |
T |
|
| Q |
119 |
tgcat-----gagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaacc |
213 |
Q |
| |
|
| | |||| |||||||||||||| |||||||||||| ||||| |||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35440745 |
ttttttatgtgagcttaagctctcttgttatctttaataatccttatgattgctttt-tcaacaattcaaactttgaattgctcaaatatctgtcaaaca |
35440843 |
T |
|
| Q |
214 |
atcttattatatacgttatttc |
235 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
35440844 |
atcttattatatacgctatttc |
35440865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 23342460 - 23342269
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| || |||||||||||| || ||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
23342460 |
aatatttacagtcatttcttgagttaggatgtgtattatataaatacatccaaaagtcagagtctaacacactaatgatctccaaattgtcagatctctg |
23342361 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaac |
212 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||| |||| ||||||||||||||| |||||||||||| |||| ||||| |
|
|
| T |
23342360 |
atgtgagcataaattctcttgttctctttaataatccttatggttgc-cttttaaacaattcaaactttaaattgctcaagtttctgccaaac |
23342269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 25382814 - 25383020
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25382814 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatttctg |
25382913 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| || |||||| ||||| || ||| |
|
|
| T |
25382914 |
atgtgagcataagctctcttgttctctttaataatccttatggttgc-tttttaaacaattcaaactttgaattgctaaaatatctgccaaacaatttta |
25383012 |
T |
|
| Q |
220 |
ttatatac |
227 |
Q |
| |
|
|||||||| |
|
|
| T |
25383013 |
ttatatac |
25383020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 31056938 - 31056726
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
|||||||||||| ||||| |||||| ||||||||||||| ||| |||||||||||| | ||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
31056938 |
aatacttacagtaatttcctgagtt-ggatgtgtattatatacaaacatccaaaagcaagagtctgacacactaatgatctccaaattgtcagatttcta |
31056840 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
|||| | | ||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31056839 |
atgtgagtaataactctcttgttctctttaataatccttatggttgcctttt-caacaattcaaactttgaattgctcaagtatctgtcaaacaatctta |
31056741 |
T |
|
| Q |
220 |
ttatatacgttattt |
234 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
31056740 |
ttatatacattattt |
31056726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 24928037 - 24928245
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| || ||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
24928037 |
aatacttacagtcattttctgagttaggatgtgtattatatacagacatccaaaagtcagagtctaacacattaatgatctccaaattgtcagatctctg |
24928136 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
||||||||| |||||||||||||||||| ||| |||||||||| ||||||||||||| |||| ||||||||| ||||||||| ||||| |||||| |
|
|
| T |
24928137 |
atgtgagcataaactctcttgttctctttaaacatccttatggttgc-attttcaacaattctaactatgaattgcttaagtatctgccaaacaatctta |
24928235 |
T |
|
| Q |
220 |
ttatatacgt |
229 |
Q |
| |
|
|||||||||| |
|
|
| T |
24928236 |
ttatatacgt |
24928245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 38145262 - 38145358
Alignment:
| Q |
138 |
ttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatcttattatatacgttatttc |
235 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||| |||||| || || |||||||||||||||||||||| |
|
|
| T |
38145262 |
ttgttctctttaataatatttatggttgcctttt-caacaattcaaactttgaattgctcaaatatctgccatacaatcttattatatacgttatttc |
38145358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 35149258 - 35149473
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagc-caaagtctgacacataaatgatctccaaattgtcagatctct |
118 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35149258 |
aatacttatagtcatttattgagttaggatgtgtattatctacttacatccaaaaaatcagagt-tgacacataaatgatctccaaattgtcagatctct |
35149356 |
T |
|
| Q |
119 |
tgcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctt |
218 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||| ||||| ||||| |
|
|
| T |
35149357 |
tgcgtgagcataagctctcttgttctctttaataatccttatggttgc-tttttcaacaattcaaactttgaattgctcaaatatctgccaaacaatctt |
35149455 |
T |
|
| Q |
219 |
attatatacgttatttcc |
236 |
Q |
| |
|
||||||| | |||||||| |
|
|
| T |
35149456 |
attatatgcattatttcc |
35149473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 3812436 - 3812648
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
|||||||||||| ||||| |||||| || |||||||||| ||| |||||||||||| | ||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
3812436 |
aatacttacagtaatttcctgagttggg-tgtgtattatatacaaacatccaaaagcaagagtctgacacacaaatgatctccaaattgtcagatttcta |
3812534 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
|||| | | ||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
3812535 |
atgtgagtaataactctcttgttctctttaataatccttatggttgcctttt-caacaattcaaactttgaattgctcaagtatctgccaaacaatctta |
3812633 |
T |
|
| Q |
220 |
ttatatacgttattt |
234 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
3812634 |
ttatatacattattt |
3812648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 350690 - 350478
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
|||||||||||| ||||| |||||| ||||||||||||| ||| |||||||||||| | ||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
350690 |
aatacttacagtaatttcctgagtt-ggatgtgtattatatacaaacatccaaaagcaagagtctgacacactaatgatctccaaattgtcagatttcta |
350592 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
|||| | | ||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
350591 |
atgtgagtaataactctcttgttctctttaataatccttatggttgcctttt-caacaattcaaactttgaattgctcaagtatctggcaaacaatctta |
350493 |
T |
|
| Q |
220 |
ttatatacgttattt |
234 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
350492 |
ttctctacgttattt |
350478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 8521453 - 8521388
Alignment:
| Q |
169 |
ttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatcttattatatacgttattt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
8521453 |
ttttcaacaattcaaactttgaattgctcaagtatctgccaaacaatcttattatatacgctattt |
8521388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 8486644 - 8486586
Alignment:
| Q |
169 |
ttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatcttattatatac |
227 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||| ||||| || ||||||||||| |
|
|
| T |
8486644 |
ttttcaacaattcaaactttgaattcctcaagtgtctgccaaacaatgttattatatac |
8486586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 8499710 - 8499652
Alignment:
| Q |
169 |
ttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatcttattatatac |
227 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||| ||||| || ||||||||||| |
|
|
| T |
8499710 |
ttttcaacaattcaaactttgaattcctcaagtgtctgccaaacaatgttattatatac |
8499652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 5543437 - 5543643
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5543437 |
aatatttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatttctg |
5543536 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
||||||||||| |||||| |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| |||||| ||||| || ||| |
|
|
| T |
5543537 |
atgtgagcataagccctcttgatctctttaataatccttatggttgc-tttttaaacaattcaaactttgaattgctcaaatatctgccaaacaatttta |
5543635 |
T |
|
| Q |
220 |
ttatatac |
227 |
Q |
| |
|
|||||||| |
|
|
| T |
5543636 |
ttatatac |
5543643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 14414835 - 14414623
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| || ||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
14414835 |
aatacttacagccatttcatgagttagaatgtgtattatctacttacatccaaaagacagagt--gacacacaaatgatctccaaattgtcagatctctg |
14414738 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||| |||||| ||||| |||||| |
|
|
| T |
14414737 |
atgtgagcataagctctcttgttctctttaataatccttatggttgct-ttttcaacaattcaaactttgaattactcaaatatctgccaaacaatctta |
14414639 |
T |
|
| Q |
220 |
ttatatacgttatttcc |
236 |
Q |
| |
|
||| ||||| ||||||| |
|
|
| T |
14414638 |
tta-atacgctatttcc |
14414623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 39728516 - 39728730
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatc-caaaagccaaagtctgacacataaatgatctccaaattgtcagatctct |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39728516 |
aatacttacagtcatttattgagttaggatgtgtattatctacttacatctaaaaagccagagtctgacacataaatgatcttcaaattgtcagatctct |
39728615 |
T |
|
| Q |
119 |
tgcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctt |
218 |
Q |
| |
|
||||||||| | |||||||||| ||||||||| |||||||||| |||||| |||||||||||||||||||| |||||| || ||| ||||| |
|
|
| T |
39728616 |
gatgtgagcataaacactcttgttctttttaataattcttatggttgcctttttc-acaattcaaactttgaattgtgaaagtatttgcaaaataatctt |
39728714 |
T |
|
| Q |
219 |
attatatacgttattt |
234 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
39728715 |
attatatacgttattt |
39728730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 32895905 - 32895693
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
|||||||||||| ||||| |||||| ||||| ||||||| ||| |||||||||||| | ||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
32895905 |
aatacttacagtaatttcctgagtt-ggatgggtattatatacaaacatccaaaagcaagagtctgacacactaatgatctccaaattgtcagatttcta |
32895807 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
|||| | | ||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32895806 |
atgtgagtaataactctcttgttctctttaataatccttatggttgcctttt-caacaattcaaactttgaattgctcaagtatctgtcaaacaatctta |
32895708 |
T |
|
| Q |
220 |
ttatatacgttattt |
234 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
32895707 |
ttatatacgttattt |
32895693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 123 - 235
Target Start/End: Complemental strand, 10704600 - 10704489
Alignment:
| Q |
123 |
tgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatcttatta |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||| | |||||||||||| |||||| || |
|
|
| T |
10704600 |
tgagcataagctctcttgttctctttaataatccttatggttgct-ttttcaacaattcaaattttgaattgctctaatatctgtcaaacaatcttacta |
10704502 |
T |
|
| Q |
223 |
tatacgttatttc |
235 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
10704501 |
tatacgctatttc |
10704489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 10704722 - 10704674
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacat |
68 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10704722 |
aatacttattgtcatttcttgagttagaatgtgtattatctacttacat |
10704674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 30036 - 29819
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
30036 |
aatacttatagtcatttcttgagttagaatgtgtattatctacttacatccaaaagtcatagtctgacacactaatgatctccaaattgtcagatttctg |
29937 |
T |
|
| Q |
120 |
gcatgagc--ataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatct |
217 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
29936 |
atgtgagcgcataagctctcttgttctctttaataatccttatggttgcctttt-caacaattcaaactttaaattgctcaagtatctgccaaacaatct |
29838 |
T |
|
| Q |
218 |
tattatatacgttatttcc |
236 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
29837 |
tattatatacgctatttcc |
29819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 11286 - 11079
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaag-ccaaagtctgacacataaatgatctccaaattgtcagatctct |
118 |
Q |
| |
|
|||||||| |||||||||||||||||| |||| |||||||||||||||||||||| ||| ||||||||| | |||||||||||||||||||||| ||| |
|
|
| T |
11286 |
aatacttatagtcatttcttgagttagaatgtctattatctacttacatccaaaaaaccatagtctgacaaactaatgatctccaaattgtcagatttct |
11187 |
T |
|
| Q |
119 |
tgcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| |||||| ||||| || || |
|
|
| T |
11186 |
gatgtgagcataagctctcttgttctctttaataatccttatggttgct-ttttaaacaattcaaactttgaattgctcaaatatctgccaaacaatttt |
11088 |
T |
|
| Q |
219 |
attatatac |
227 |
Q |
| |
|
|| |||||| |
|
|
| T |
11087 |
atcatatac |
11079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 3876 - 4088
Alignment:
| Q |
20 |
aatacttacagtcatttcttgagttaggatgtgtattatctacttacatccaaaagccaaagtctgacacataaatgatctccaaattgtcagatctctt |
119 |
Q |
| |
|
||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| || ||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
3876 |
aatacttacagccatttcatgagttagaatgtgtattatctacttacatccaaaagacagagt--gacacacaaatgatctccaaattgtcagatctctg |
3973 |
T |
|
| Q |
120 |
gcatgagcataagctctcttgttctctttaataatctttatggttgcttttttcaacaattcaaactttgaattgctcaagtatctgtcaaaccatctta |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||| |||||| ||||| |||||| |
|
|
| T |
3974 |
atgtgagcataagctctcttgttctctttaataatccttatggttgc-tttttcaacaattcaaactttgaattactcaaatatctgccaaacaatctta |
4072 |
T |
|
| Q |
220 |
ttatatacgttatttcc |
236 |
Q |
| |
|
||| ||||| ||||||| |
|
|
| T |
4073 |
tta-atacgctatttcc |
4088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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