View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5218_low_29 (Length: 256)

Name: NF5218_low_29
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5218_low_29
NF5218_low_29
[»] chr6 (7 HSPs)
chr6 (14-256)||(2592756-2592998)
chr6 (51-255)||(2624311-2624514)
chr6 (69-161)||(2624631-2624723)
chr6 (50-198)||(2568334-2568480)
chr6 (56-240)||(2671666-2671846)
chr6 (170-255)||(2634879-2634965)
chr6 (46-82)||(2596004-2596040)
[»] scaffold0103 (1 HSPs)
scaffold0103 (170-255)||(5044-5130)


Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 2592756 - 2592998
Alignment:
Q  14 agatgggttgatgatgtagttgttgtagtaattaataggtgaaattgaaaagaaaattgagaagaggttcaaggaaattggtttcaacttagcttcctaa 113  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2592756 agatgggttgatgatgtagttgttgtagtaattaataggcgaaattgaaaagaaaactgagaagaggttcaaggaaattggtttcaacttagcttcctaa 2592855  T
Q  114 aattttcatttctataatcatcaaaattgtaggtttgtctaacataacacaattcctatgataataactatatggttatattgtaatttagttaaatcct 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2592856 aattttcatttctataatcatcaaaattgtaggtttgtctaacataacacaattcctatgataataactatatggttatattgtaatttagttaaatcct 2592955  T
Q  214 tttgctactatgtataatctttggtctatctatctctatatct 256  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  2592956 tttgctactatgtatattctttggtctatctatctctatatct 2592998  T

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Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 51 - 255
Target Start/End: Original strand, 2624311 - 2624514
Alignment:
Q  51 ggtgaaattgaaaagaaaattgagaagaggttcaaggaaattggtttcaacttagcttcctaaaattttcatttctataatcatcaaaattgtaggtttg 150  Q
    |||||||||||||||||||||||||||| |||||  ||||||||||||| |||||||||| |||| |  |||||||| |||||||||||||||||||||     
T  2624311 ggtgaaattgaaaagaaaattgagaagaagttcagagaaattggtttcaccttagcttccaaaaaat--catttctacaatcatcaaaattgtaggtttt 2624408  T
Q  151 tctaacataacacaattcctatgataataactatatggttatattgtaatttagttaaatcctttt-gctactatgtataatctttggtctatctatctc 249  Q
    |||||||||||||||||  |||| |||| |||||||| |||||||||||| |||||||||||||||  ||||||||||||||||||  ||||| | ||||    
T  2624409 tctaacataacacaatttatatgctaattactatatgtttatattgtaatatagttaaatccttttctctactatgtataatctttattctatatttctc 2624508  T
Q  250 tatatc 255  Q
    ||||||    
T  2624509 tatatc 2624514  T

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Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 69 - 161
Target Start/End: Original strand, 2624631 - 2624723
Alignment:
Q  69 attgagaagaggttcaaggaaattggtttcaacttagcttcctaaaattttcatttctataatcatcaaaattgtaggtttgtctaacataac 161  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||| ||| || ||||||||||| || |||||||||||    
T  2624631 attgagaagaggttcagggaaattggtttcaccttagcttcctaaaaatttcatttctacaattatgaaaattgtaggcttttctaacataac 2624723  T

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Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 198
Target Start/End: Complemental strand, 2568480 - 2568334
Alignment:
Q  50 aggtgaaattgaaaagaaaattgagaagaggttcaaggaaattggtttcaacttagcttcctaaaattttcatttctataatcatcaaaattgtaggttt 149  Q
    ||||||||||||||| |||||||||  |||||| | |||||||||||    |||||||||  |||| |||||||| || ||||||||||||||| |||||    
T  2568480 aggtgaaattgaaaataaaattgag--gaggtttacggaaattggttgtcccttagcttctaaaaaatttcatttgtacaatcatcaaaattgttggttt 2568383  T
Q  150 gtctaacataacacaattcctatgataataactatatggttatattgta 198  Q
     || ||||||| |||||||||||| |||| ||||||| ||||| |||||    
T  2568382 ttcaaacataagacaattcctatgttaattactatatagttattttgta 2568334  T

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Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 240
Target Start/End: Complemental strand, 2671846 - 2671666
Alignment:
Q  56 aattgaaaagaaaattgagaagaggttcaaggaaattggtttcaactt-agcttcctaaaattttcatttctataatcatcaaaattgtaggtttgtcta 154  Q
    ||||||||||||||||||||||||||| ||||| |||| || |  ||| ||||||| ||| ||||||| | || ||||||||||||||| ||||| || |    
T  2671846 aattgaaaagaaaattgagaagaggtttaaggagattgtttgctcctttagcttccaaaagttttcatctgtacaatcatcaaaattgttggtttttcaa 2671747  T
Q  155 acataacacaattcctatgataataactatatggttatattgtaatttagttaaatccttttgctactatgtataatctttggtct 240  Q
    ||||| ||||||||||||| ||||     || |||| ||||||||| |||||| ||| ||||   |||||||||| ||||| ||||    
T  2671746 acatagcacaattcctatgttaat-----tacggttctattgtaatatagttacatctttttttgactatgtatagtcttttgtct 2671666  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 2634879 - 2634965
Alignment:
Q  170 tatgataataactatatggttatattgtaatttagttaaatcc-ttttgctactatgtataatctttggtctatctatctctatatc 255  Q
    |||| |||| ||||||| ||||||||||||| ||||||||||| |||| | |||| ||||||| |||| ||||||||| ||||||||    
T  2634879 tatgctaattactatatcgttatattgtaatatagttaaatccttttttcaactaagtataatttttgctctatctatttctatatc 2634965  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 2596040 - 2596004
Alignment:
Q  46 taataggtgaaattgaaaagaaaattgagaagaggtt 82  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  2596040 taataggtaaaattgaaaagaaaaatgagaagaggtt 2596004  T

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Target: scaffold0103 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 5130 - 5044
Alignment:
Q  170 tatgataataactatatggttatattgtaatttagttaaatcc-ttttgctactatgtataatctttggtctatctatctctatatc 255  Q
    |||| |||| ||||||| ||||||||||||| ||||||||||| |||| | |||| ||||||| |||| ||||||||| ||||||||    
T  5130 tatgctaattactatatcgttatattgtaatatagttaaatccttttttcaactaagtataatttttgctctatctatttctatatc 5044  T

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