View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_low_36 (Length: 247)
Name: NF5218_low_36
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_low_36 |
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| [»] chr6 (5 HSPs) |
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| [»] scaffold0299 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 6681786 - 6682011
Alignment:
| Q |
20 |
tgccaaattttattatctttgatgaagcatattaaatttcgttgaagcgtaagcgtaaacagttcgacataagtgttgtgattttaatctttccttttgt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6681786 |
tgccaaattttattatctttgatgaagcatattaaatttcgttgaagc--aagcgtaaacagctcgacataagtgttgtgattttaatctttccttttgt |
6681883 |
T |
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| Q |
120 |
gtatataaatttgattatgtaacatacataggttaggaataggcttattattgattctcttaaaataagagattcaattttgtgttgttgtaaaagtata |
219 |
Q |
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| T |
6681884 |
gtatataaatttgattatgtaacatacataggttaggaataggcttattattgattctcttaaaataagagattcaattttgtgttgttgtaaaagtata |
6681983 |
T |
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| Q |
220 |
ttcaatggttgagaggcaaagctccaac |
247 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
6681984 |
ttcaatggttgagaggcaaagctccaac |
6682011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 152 - 246
Target Start/End: Complemental strand, 6771416 - 6771322
Alignment:
| Q |
152 |
ttaggaataggcttattattgattctcttaaaataagagattcaattttgtgttgttgtaaaagtatattcaatggttgagaggcaaagctccaa |
246 |
Q |
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| T |
6771416 |
ttaggaataggcttattattgattctcttaaaataagagattcaattttgtgttgttttaaaagtatattcaatggttgagaggctaagctccaa |
6771322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 6670820 - 6670860
Alignment:
| Q |
27 |
ttttattatctttgatgaagcatattaaatttcgttgaagc |
67 |
Q |
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|||||| | |||||||||||||||||||||||||||||||| |
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| T |
6670820 |
ttttatcagctttgatgaagcatattaaatttcgttgaagc |
6670860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 6682044 - 6682096
Alignment:
| Q |
182 |
aaataagagattcaattttgtgttgttgtaaaagtatattcaatggttgagag |
234 |
Q |
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|||| |||||||||||||||| ||||||| || |||||||||||| ||||||| |
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| T |
6682044 |
aaattagagattcaattttgtattgttgtgaatgtatattcaatgattgagag |
6682096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 6670987 - 6671037
Alignment:
| Q |
175 |
tctcttaaaataagagattcaattttgtgttgttgtaaaagtatattcaat |
225 |
Q |
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| T |
6670987 |
tctcttaaaacaagagaatcaattttgtattgttgtgaatgtatattcaat |
6671037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: scaffold0299
Description:
Target: scaffold0299; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 49 - 247
Target Start/End: Original strand, 17452 - 17650
Alignment:
| Q |
49 |
tattaaatttcgttgaagcgtaagcgtaaacagttcgacataagtgttgtgattttaatctttccttttgtgtatataaatttgattatgtaacatacat |
148 |
Q |
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| T |
17452 |
tattaaatttcgttgaagcctaagcgtaaacagttcgacataagtgttgtaattttcatccttccttttctgtatataaatttgtttatgtaacatatat |
17551 |
T |
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| Q |
149 |
aggttaggaataggcttattattgattctcttaaaataagagattcaattttgtgttgttgtaaaagtatattcaatggttgagaggcaaagctccaac |
247 |
Q |
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| T |
17552 |
aggttaggaataggctcattattcatactcttaaaatgagagactcaattttgtgttgttgtgaatatttattcaatggtagagagtcaaagctccaac |
17650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 49 - 234
Target Start/End: Original strand, 17228 - 17413
Alignment:
| Q |
49 |
tattaaatttcgttgaagcgtaagcgtaaacagttcgacataagtgttgtgattttaatctttccttttgtgtatataaatttgattatgtaacatacat |
148 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||| |||||||| |||||||||||||| |||||||||||| || |
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| T |
17228 |
tattaaatttcgttgaagcataagcgtaaacagttcgacataagtgttgtaattttcatccttccttttctgtatataaatttgtttatgtaacatatat |
17327 |
T |
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| Q |
149 |
aggttaggaataggcttattattgattctcttaaaataagagattcaattttgtgttgttgtaaaagtatattcaatggttgagag |
234 |
Q |
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| T |
17328 |
aggttaggaataggctcattattcatactcttaaaatgagagactcaattttgtgttgttgtgaatatttattcaatggtagagag |
17413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 6160356 - 6160153
Alignment:
| Q |
20 |
tgccaaattttattatctttgatgaagcatattaaatttcgttgaagcgtaagcgtaaacagttcgacataagtgttgtgattttaatctttccttttgt |
119 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||| |||| |||| || |||| ||||||||||| |||| |||||||||||||| |
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| T |
6160356 |
tgccaaattttattaactttgatgaagc-tattaaatttcgttaaagc-taagtgtcaaca--------taagtgttgtgcttttcatctttccttttgt |
6160267 |
T |
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| Q |
120 |
gtatataaatttgattatgtaacatacataggttaggaataggcttattattgattctcttaaaataagagattcaattttgtgttgttgtaaaagtata |
219 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
6160266 |
gtatgtaaatttgattatgtat-atacataggttaggaatagccttattattcattctcttaaaataagagattcaattttgtgttgttgtgaatgtata |
6160168 |
T |
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| Q |
220 |
ttcaatggttgagag |
234 |
Q |
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||||||||||||||| |
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| T |
6160167 |
ttcaatggttgagag |
6160153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 23 - 247
Target Start/End: Complemental strand, 36845932 - 36845696
Alignment:
| Q |
23 |
caaattttattatctttgatgaagcatattaaatttcgttgaagcgtaagcgtaaacagtt---cgacataagtgttgtgattttaatctttccttttgt |
119 |
Q |
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|||||||||||| |||||||||||||| ||||||||| ||||||| |||| |||||||||| || || |||||||||||||| |||||||||||||| |
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| T |
36845932 |
caaattttattagctttgatgaagcattttaaatttcattgaagc-taagtgtaaacagtttaacgtaattagtgttgtgattttcatctttccttttgt |
36845834 |
T |
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| Q |
120 |
gtatataaatttg---attatgtaacatacata-------ggttaggaataggcttattattga-ttctcttaaaataagagattcaattttgtgttgtt |
208 |
Q |
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||||||||||||| ||||||| | ||||||| |||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
36845833 |
gtatataaatttgattattatgt-atatacataggttaggggttaggaatagccttattattcatttctcttaaaataagagattcaattttgtgttgtt |
36845735 |
T |
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| Q |
209 |
gtaaaagtatattcaatggttgagaggcaaagctccaac |
247 |
Q |
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|| || ||||||||||||||||||| | |||||||||| |
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| T |
36845734 |
gtgaatatatattcaatggttgagagcctaagctccaac |
36845696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 49884268 - 49884330
Alignment:
| Q |
80 |
agttcgacataagtgttgtgattttaatctttcc--ttttgtgtatataaatttgattatgta |
140 |
Q |
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||||| |||||||||||| |||||| |||||||| |||||||||||||| |||||| ||||| |
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| T |
49884268 |
agttcaacataagtgttgagattttcatctttccttttttgtgtatataattttgatcatgta |
49884330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 67
Target Start/End: Original strand, 49884214 - 49884244
Alignment:
| Q |
37 |
tttgatgaagcatattaaatttcgttgaagc |
67 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
49884214 |
tttgatgaagcatattaaatttcgttgaagc |
49884244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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