View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_low_37 (Length: 242)
Name: NF5218_low_37
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_low_37 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 48308155 - 48308378
Alignment:
| Q |
19 |
gtttaggtaagtcttgttaattttataggtttactttatatgcatttgtcttggttaaaagagtattttagaagatgaagatgaagagcccacaggcaga |
118 |
Q |
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| T |
48308155 |
gtttaggtaagtcttgttaattttataggtttactttatatgcatttgtcttggttaaaagagtatttttgaagatgaagatgaagagcccacaggcaga |
48308254 |
T |
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| Q |
119 |
gatcaagaactaagaatagatgcatacaaaagaaattccattaccatataatataataacaattttcaagaaaatggagtttctaatttctaataccatc |
218 |
Q |
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| T |
48308255 |
gatcaagaactaagaatagatgcgtacaaaagaaattccattaccatataatataataataattttcaagaaaatggagtttctaatttctaataccatc |
48308354 |
T |
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| Q |
219 |
aacgatgaaagcagagtaacctta |
242 |
Q |
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| T |
48308355 |
aacgatgaaagcagagtaacctta |
48308378 |
T |
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