View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_low_39 (Length: 241)
Name: NF5218_low_39
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 2 - 205
Target Start/End: Complemental strand, 45702592 - 45702388
Alignment:
| Q |
2 |
tatatatagagaaactatgtaacaaattaactttgattctccatctttcttccataacaaaaaattgatattctctctaacaaactccttttgtttttca |
101 |
Q |
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| T |
45702592 |
tatatatagagaaactatgtaacaaattaactttgattctccatctttcttccataacaaaaaattgatattctctctaacaaactccttttgtttttca |
45702493 |
T |
|
| Q |
102 |
cacattttatatctttcccataacaaacaattgatttactaataagttgatatactagtaag-ttatctctttcccataacaaacaatttatctatttat |
200 |
Q |
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| T |
45702492 |
cacattttatatctttcccataacaaacaattgatttactaataagttgatatactagtaagtttatctctttcccataataaacaatttatctatttat |
45702393 |
T |
|
| Q |
201 |
ctatt |
205 |
Q |
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||||| |
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| T |
45702392 |
ctatt |
45702388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 45643678 - 45643829
Alignment:
| Q |
1 |
ctatatatagagaaactatgtaacaaattaactttgattctccatct---ttcttccataacaaaa-aattgatattctctctaacaaactccttttgtt |
96 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||||| |||| || || | ||||||| |||||||||||||||||||||||| ||||| || |
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| T |
45643678 |
ctatatatagggaaactatgaaacaaattaactttgattctctatctgttttttttcgtaacaaagtaattgatattctctctaacaaacttcttttatt |
45643777 |
T |
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| Q |
97 |
tt--tcacacattttatatctttcccataacaaacaattgatttactaataa |
146 |
Q |
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|| ||||||||||||||||||| |||||| |||||||| ||||| |||||| |
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| T |
45643778 |
tttttcacacattttatatcttttccataataaacaatttatttattaataa |
45643829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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