View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_low_40 (Length: 240)
Name: NF5218_low_40
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_low_40 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 2593130 - 2593352
Alignment:
| Q |
1 |
catatgtacttgattacctagcgatgtagaaaacttgaagtacaacatttcctaacaaattgatgtaannnnnnnnnactcctatgatatataaccaagt |
100 |
Q |
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| T |
2593130 |
catatgtacttgattccctagcgatgtagaaaacttgaagtagaacatttcctaacaacttgatgtaaaaatttcttactcctatgatatataaccaagt |
2593229 |
T |
|
| Q |
101 |
tggtatcaattatgtttcaaatgattttcatacctcaaactttagaaaattagttagaccacacaaataactttccaatcaatatctaacaatacaatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2593230 |
tggtatcaattatgtttcaaatgattttcatacctcaaactttagaaaattagttagaccacacaaataactttccaatcaatatctaacaatacaatat |
2593329 |
T |
|
| Q |
201 |
acactcatgtgaaaccaagaaag |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
2593330 |
acactcatgtgaaaccaagaaag |
2593352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2635104 - 2635326
Alignment:
| Q |
1 |
catatgtacttgattacctagcgatgtagaaaacttgaagtacaacatttcctaacaaattgatgtaannnnnnnnnactcctatgat--atataaccaa |
98 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||| | |||||||||||| || | |||| |||||||||| ||||||| || |
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| T |
2635104 |
catatgtacttgattacctatcgatgtagaaaactt-aagtagactatttcctaacaacttaaagtaaaaatttcttcctcctatgatgtatataactaa |
2635202 |
T |
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| Q |
99 |
gttggtatcaattatgtttcaaatgattttcatacctcaaactttagaaaattagttagaccacacaaataactttccaatcaatatctaacaatacaat |
198 |
Q |
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| T |
2635203 |
gtttgtatcaattatgtttcaaatgattttcatacctcacactttggaatattagttagacggcacaaataacttttcaatcactatctaacattataat |
2635302 |
T |
|
| Q |
199 |
gtacactcatgtgaaaccaagaaa |
222 |
Q |
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|||| |||||| ||||| |||||| |
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| T |
2635303 |
gtactctcatgcgaaactaagaaa |
2635326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 2671511 - 2671378
Alignment:
| Q |
90 |
tataaccaagttggtatcaattatgtttcaaatgattttcatacctcaaactttagaaaattagttagaccacacaaataactttccaatcaatatctaa |
189 |
Q |
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|||||||||| || |||||||| | ||||||||||||||||||||||| |||| |||||||||||||| | |||| || ||| ||||| | ||||| |
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| T |
2671511 |
tataaccaagatgttatcaattctatttcaaatgattttcatacctcactctttggaaaattagttagaagccccaaagaatttttcaatctctctctaa |
2671412 |
T |
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| Q |
190 |
caatacaatgtacactcatgtgaaaccaagaaag |
223 |
Q |
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| T |
2671411 |
tatgataatgtacactcatgtgaaactaagaaag |
2671378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4905 - 4683
Alignment:
| Q |
1 |
catatgtacttgattacctagcgatgtagaaaacttgaagtacaacatttcctaacaaattgatgtaannnnnnnnnactcctatgat--atataaccaa |
98 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||| | |||||||||||| || | |||| |||||||||| ||||||| || |
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| T |
4905 |
catatgtacttgattacctatcgatgtagaaaactt-aagtagactatttcctaacaacttaaagtaaaaatttcttcctcctatgatgtatataactaa |
4807 |
T |
|
| Q |
99 |
gttggtatcaattatgtttcaaatgattttcatacctcaaactttagaaaattagttagaccacacaaataactttccaatcaatatctaacaatacaat |
198 |
Q |
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||| ||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| ||||||||||||| |||||| ||||||||| || ||| |
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| T |
4806 |
gtttgtatcaattatgtttcaaatgattttcatacctcacactttggaatattagttagacggcacaaataacttttcaatcactatctaacattataat |
4707 |
T |
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| Q |
199 |
gtacactcatgtgaaaccaagaaa |
222 |
Q |
| |
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|||| |||||| ||||| |||||| |
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| T |
4706 |
gtactctcatgcgaaactaagaaa |
4683 |
T |
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