View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_low_45 (Length: 237)
Name: NF5218_low_45
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 24 - 219
Target Start/End: Original strand, 38714898 - 38715093
Alignment:
| Q |
24 |
tgaagttcatctacatagcattttcatatttttacatcgatcaatatttttctacataagnnnnnnnttatacattagtctaatctaactggtctcatat |
123 |
Q |
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| T |
38714898 |
tgaagttcatctacatagcattttcatatttttacatcgatcaatatttttctacataagaaaaaaattatacattagtctaatctaactggtctcatat |
38714997 |
T |
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| Q |
124 |
aaataaaccgtaatcacctgtataannnnnnnatttgatgataaaagtgtttgtcaaatttaacaaatcgttgaaatggaaatgcaaagcaagtac |
219 |
Q |
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| T |
38714998 |
aaataaaccgtaatcacctgtataatttttttatttgatgataaaagtgtttgtctaatttaacaaatcgttgaaatggaaatgcaaagcaagtac |
38715093 |
T |
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