View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_low_47 (Length: 232)
Name: NF5218_low_47
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 6568112 - 6567919
Alignment:
| Q |
17 |
cagagaggtcagtggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatga |
116 |
Q |
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| T |
6568112 |
cagagaggtcagtggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatga |
6568013 |
T |
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| Q |
117 |
acttgatgagatgagtggagggagagacattgaacaagcacttttaaggctaggatgtaacccttctgtgcctgctgtgttcattggtggtgag |
210 |
Q |
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| T |
6568012 |
acttgatgagatgagtggagggagagacattgaacaagcacttttaaggctaggatgtaacccttctgtgcctgctgtgttcattggtggtgag |
6567919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 49289816 - 49289958
Alignment:
| Q |
17 |
cagagaggtcagtggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatga |
116 |
Q |
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| T |
49289816 |
cagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatga |
49289915 |
T |
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| Q |
117 |
acttgatgagatgagtggagggagagacattgaacaagcactt |
159 |
Q |
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| T |
49289916 |
acttgatgagataccaagagggagagagattgaacaagcactt |
49289958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 49296767 - 49296909
Alignment:
| Q |
17 |
cagagaggtcagtggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatga |
116 |
Q |
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| T |
49296767 |
cagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatga |
49296866 |
T |
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| Q |
117 |
acttgatgagatgagtggagggagagacattgaacaagcactt |
159 |
Q |
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| T |
49296867 |
acttgatgagataccaagagggagagagattgaacaagcactt |
49296909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 49303497 - 49303639
Alignment:
| Q |
17 |
cagagaggtcagtggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatga |
116 |
Q |
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|||| ||| ||||||||||||||||||||||| ||||||||| |||| ||||| || || || || |||||||||| |||||||||| ||| |||| |
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| T |
49303497 |
cagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatga |
49303596 |
T |
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| Q |
117 |
acttgatgagatgagtggagggagagacattgaacaagcactt |
159 |
Q |
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| T |
49303597 |
acttgatgagataccaagagggagagagattgaacaagcactt |
49303639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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