View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5218_low_5 (Length: 463)

Name: NF5218_low_5
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5218_low_5
NF5218_low_5
[»] chr7 (6 HSPs)
chr7 (3-444)||(26975211-26975646)
chr7 (115-165)||(40561719-40561769)
chr7 (113-165)||(27571936-27571988)
chr7 (179-219)||(36797169-36797209)
chr7 (113-165)||(40491652-40491704)
chr7 (113-165)||(45557439-45557491)
[»] chr1 (8 HSPs)
chr1 (113-165)||(34915140-34915192)
chr1 (115-165)||(48548975-48549025)
chr1 (115-164)||(44786879-44786928)
chr1 (113-165)||(35961442-35961494)
chr1 (130-165)||(24697574-24697609)
chr1 (113-165)||(441594-441646)
chr1 (113-165)||(5268293-5268345)
chr1 (113-149)||(29759709-29759745)
[»] chr8 (2 HSPs)
chr8 (113-164)||(16972023-16972074)
chr8 (113-165)||(18123300-18123352)
[»] chr6 (7 HSPs)
chr6 (115-165)||(32888918-32888968)
chr6 (115-165)||(34620960-34621010)
chr6 (115-165)||(34748397-34748447)
chr6 (116-165)||(1499974-1500023)
chr6 (115-165)||(882760-882810)
chr6 (113-163)||(25208702-25208752)
chr6 (168-220)||(13687258-13687310)
[»] chr5 (4 HSPs)
chr5 (113-165)||(117455-117507)
chr5 (113-147)||(24036623-24036657)
chr5 (118-164)||(34443050-34443096)
chr5 (115-160)||(4306591-4306636)
[»] chr2 (3 HSPs)
chr2 (113-165)||(44439328-44439380)
chr2 (113-165)||(15220820-15220872)
chr2 (113-165)||(16518852-16518904)
[»] chr4 (1 HSPs)
chr4 (113-161)||(22683942-22683990)
[»] chr3 (1 HSPs)
chr3 (115-147)||(47278799-47278831)


Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 3 - 444
Target Start/End: Original strand, 26975211 - 26975646
Alignment:
Q  3 aaaaatactagaaatcttagtttgatacatagtataagttacacacactcaaacttgatttcgaaaaaatgtttgggtgtgacctgcaaaagctgatttt 102  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  26975211 aaaaatactagaaatcttagtttgatacata---taagttacacacactcaaacttgatttcgaaaaaatgtttgggtgtgatctgcgaaagctgatttt 26975307  T
Q  103 agttataagtagtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgagacaaattttaatgtaaaaatcagatttagagataaaa 202  Q
    ||||||||||   |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26975308 agttataagt---gagttgaatgtaaaatgatttatgtttgaatacgtttatgtaaaagtgagacaaattttaatgtaaaaatcagatttagagataaaa 26975404  T
Q  203 actacaaatcataacttcaatttaaaatcaattatacttgaacacgttcaaacgcatcaaaagcaattctacatatccataatcaattttaactcatgat 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26975405 actacaaatcataacttcaatttaaaatcaattatacttgaacacgttcaaacgcatcaaaagcaattctacatatccataatcaattttaactcatgat 26975504  T
Q  303 caacggtgaaatcaaacacacttagtggatgtttgggttcgtggagcgatggttagaattacgatgaaccatcacaattttgacaaaaactacactcaca 402  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26975505 caacagtgaaatcaaacacacttagtggatgtttgggttcgtggagcgatggttagaattacgatgaaccatcacaattttgacaaaaactacactcaca 26975604  T
Q  403 agttacaacttcaacaaatatttgtgattttgtcaaactgat 444  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  26975605 agttacaacttcaacaaatatttgtgattttgtcaaactgat 26975646  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 40561719 - 40561769
Alignment:
Q  115 tgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 165  Q
    ||||||||| ||||| ||||||||||||| |||| || |||||||||||||    
T  40561719 tgagttgaaagtaaagtgatttatgtttggatacattcatgtaaaagtgag 40561769  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 27571988 - 27571936
Alignment:
Q  113 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 165  Q
    |||||||| || ||||||||||||||| ||| |||| |||||||||| |||||    
T  27571988 agtgagttaaaggtaaaatgatttatggttggatacatttatgtaaatgtgag 27571936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 36797169 - 36797209
Alignment:
Q  179 taaaaatcagatttagagataaaaactacaaatcataactt 219  Q
    ||||||||| |||| |||||||||||||||||| |||||||    
T  36797169 taaaaatcacattttgagataaaaactacaaattataactt 36797209  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 40491704 - 40491652
Alignment:
Q  113 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 165  Q
    ||||||||||| ||||| |||||||| |||| |||| || |||||||||||||    
T  40491704 agtgagttgaaggtaaagtgatttatttttggatacattcatgtaaaagtgag 40491652  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 45557491 - 45557439
Alignment:
Q  113 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 165  Q
    ||||||||||| ||||| |||||| |||||| |||| || |||||||||||||    
T  45557491 agtgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtgag 45557439  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 34915192 - 34915140
Alignment:
Q  113 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 165  Q
    ||||||||| | |||||||||||||||||||||||| || |||||||||||||    
T  34915192 agtgagttgcaggtaaaatgatttatgtttgaatacattcatgtaaaagtgag 34915140  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 48548975 - 48549025
Alignment:
Q  115 tgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 165  Q
    ||||||||| ||||||||||||||||||  |||| ||||||||||||||||    
T  48548975 tgagttgaaggtaaaatgatttatgttttgatacatttatgtaaaagtgag 48549025  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 44786879 - 44786928
Alignment:
Q  115 tgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtga 164  Q
    ||||||||| ||||||||||||||||| |||||| || ||||||||||||    
T  44786879 tgagttgaatgtaaaatgatttatgttcgaatacattcatgtaaaagtga 44786928  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 35961494 - 35961442
Alignment:
Q  113 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 165  Q
    ||||||||||| ||||||||||||||||||  |||| || |||||||||||||    
T  35961494 agtgagttgaaggtaaaatgatttatgtttctatacattcatgtaaaagtgag 35961442  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 165
Target Start/End: Original strand, 24697574 - 24697609
Alignment:
Q  130 atgatttatgtttgaatacgtttatgtaaaagtgag 165  Q
    |||||||||||||| |||||||||||||||||||||    
T  24697574 atgatttatgtttggatacgtttatgtaaaagtgag 24697609  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 441594 - 441646
Alignment:
Q  113 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 165  Q
    ||||| ||||| || ||||||||||||||||||||| ||||| ||||| ||||    
T  441594 agtgatttgaatgtgaaatgatttatgtttgaatacatttatataaaaatgag 441646  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 5268345 - 5268293
Alignment:
Q  113 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 165  Q
    ||||||||||| ||||| |||||| ||||||||||  || |||||||||||||    
T  5268345 agtgagttgaatgtaaagtgatttttgtttgaatatattcatgtaaaagtgag 5268293  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 29759745 - 29759709
Alignment:
Q  113 agtgagttgaacgtaaaatgatttatgtttgaatacg 149  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  29759745 agtgagttgaatgtaaaatgatttatgtttggatacg 29759709  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 16972023 - 16972074
Alignment:
Q  113 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtga 164  Q
    ||||||||||| |||||||||||| ||||||||||| || ||||||||||||    
T  16972023 agtgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtga 16972074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 18123352 - 18123300
Alignment:
Q  113 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 165  Q
    ||||| ||||| |||||||||||| |||| |||||  ||||||||||||||||    
T  18123352 agtgaattgaaggtaaaatgatttgtgttggaatatatttatgtaaaagtgag 18123300  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 32888918 - 32888968
Alignment:
Q  115 tgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 165  Q
    |||||||||  ||||||||||||||||||||||  ||||||||||||||||    
T  32888918 tgagttgaagataaaatgatttatgtttgaatatatttatgtaaaagtgag 32888968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 34621010 - 34620960
Alignment:
Q  115 tgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 165  Q
    ||||||||| ||||| ||||||||||||| |||| ||||||||||||||||    
T  34621010 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgag 34620960  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 34748447 - 34748397
Alignment:
Q  115 tgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 165  Q
    ||||||||| ||||| ||||||||||||| |||| ||||||||||||||||    
T  34748447 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgag 34748397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 1500023 - 1499974
Alignment:
Q  116 gagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 165  Q
    |||||||  ||||| |||||||||||||||||| ||||||||||||||||    
T  1500023 gagttgagtgtaaattgatttatgtttgaatacatttatgtaaaagtgag 1499974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 882810 - 882760
Alignment:
Q  115 tgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 165  Q
    ||||||||| ||||||||||||||||||| |||| || ||| |||||||||    
T  882810 tgagttgaaggtaaaatgatttatgtttggatacattcatgcaaaagtgag 882760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 25208752 - 25208702
Alignment:
Q  113 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtg 163  Q
    ||||||||||| ||||||||||||||||||  |||  ||||||||||||||    
T  25208752 agtgagttgaatgtaaaatgatttatgtttcgatagatttatgtaaaagtg 25208702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 13687310 - 13687258
Alignment:
Q  168 aaattttaatgtaaaaatcagatttagagataaaaactacaaatcataacttc 220  Q
    |||||| ||||||||||||| ||||||||| ||||||| ||| || |||||||    
T  13687310 aaatttgaatgtaaaaatcatatttagagacaaaaacttcaagtcttaacttc 13687258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 117455 - 117507
Alignment:
Q  113 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 165  Q
    ||||||||||| ||||||||||| ||||||| |||| | ||||||||||||||    
T  117455 agtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgag 117507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 147
Target Start/End: Complemental strand, 24036657 - 24036623
Alignment:
Q  113 agtgagttgaacgtaaaatgatttatgtttgaata 147  Q
    ||||||||||| |||||||||||||||||||||||    
T  24036657 agtgagttgaatgtaaaatgatttatgtttgaata 24036623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 34443096 - 34443050
Alignment:
Q  118 gttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtga 164  Q
    |||||| ||||||| |||||||||||||||| ||||| |||||||||    
T  34443096 gttgaaagtaaaataatttatgtttgaatacatttatataaaagtga 34443050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 4306636 - 4306591
Alignment:
Q  115 tgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaa 160  Q
    ||||||||| ||||||||||||||||||| |||| || ||||||||    
T  4306636 tgagttgaatgtaaaatgatttatgtttggatacattcatgtaaaa 4306591  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 44439380 - 44439328
Alignment:
Q  113 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 165  Q
    |||||||| || ||||| ||||||||||||| ||| |||||||||||||||||    
T  44439380 agtgagttaaatgtaaagtgatttatgtttggatatgtttatgtaaaagtgag 44439328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 15220820 - 15220872
Alignment:
Q  113 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 165  Q
    ||||||||||| ||||| ||||||||||||| |||| || |||| ||||||||    
T  15220820 agtgagttgaatgtaaagtgatttatgtttggatacattcatgttaaagtgag 15220872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 16518904 - 16518852
Alignment:
Q  113 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 165  Q
    ||||||||||  |||||||||||| |||||| |||| || |||||||||||||    
T  16518904 agtgagttgagggtaaaatgatttgtgtttggatacattcatgtaaaagtgag 16518852  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 22683990 - 22683942
Alignment:
Q  113 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaag 161  Q
    ||||||||||| |||||||| |||||||||| | || ||||||||||||    
T  22683990 agtgagttgaaagtaaaatggtttatgtttggacacatttatgtaaaag 22683942  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 47278831 - 47278799
Alignment:
Q  115 tgagttgaacgtaaaatgatttatgtttgaata 147  Q
    ||||||||| |||||||||||||||||||||||    
T  47278831 tgagttgaatgtaaaatgatttatgtttgaata 47278799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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