View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_low_6 (Length: 454)
Name: NF5218_low_6
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 78 - 439
Target Start/End: Original strand, 43541907 - 43542271
Alignment:
| Q |
78 |
gatgacagtacaatggccaataaatctttagcgttttgattactcatgagggctaccttctggctgctatccatgacaatgaatagatttggtaagattc |
177 |
Q |
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| T |
43541907 |
gatgacagtacaatggctaataaatctttagcgttttgattactcatgagggctaccttctggctgctatccatgacaatgaatagatttgatcagattc |
43542006 |
T |
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| Q |
178 |
tcagaaatctctcttgactcctgcttctgaaagcctcggattctggctgcaagactagctatattact---atcatcatcatcataaggacatgtctcat |
274 |
Q |
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| T |
43542007 |
tcagaaatctctcttgactcctgcttctgaaagcctcggattctggctgcaagactagctatattactatcatcatcatcatcataaggacatgtctcat |
43542106 |
T |
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| Q |
275 |
tcaaaactacaaaagataaccaaccagaaaatgctatcatcaactgtcatattnnnnnnntacaacgattaacaaaaggagctcacaacattaatccata |
374 |
Q |
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| T |
43542107 |
tcaaaactacaaaagataaccaaccagaaaatgttatcatcaactgtcatattaaaaaaatacaacgattaacaaaaggagctcacaacattaatccata |
43542206 |
T |
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| Q |
375 |
tatgactgaattaatcttgaacaaactatattatatgctacatatttgatgacataatggtaatg |
439 |
Q |
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| T |
43542207 |
tatgagtgaattaatcttgaacaaactatattatatgctacatatttgatgacataatggtaatg |
43542271 |
T |
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