View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_low_7 (Length: 425)
Name: NF5218_low_7
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 10 - 409
Target Start/End: Original strand, 37835491 - 37835890
Alignment:
| Q |
10 |
atcatcataatgtcatttctcttaacctcactagtcgtgggatttttggtcaacttgggacagaaattgtgaaccttcatcacttgcagacccttgtatt |
109 |
Q |
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| T |
37835491 |
atcatcataatgtcatttctcttaacctcactagtcgtgggatttttggtcaacttgggacagaaattttgaaccttcatcacttgcagacccttgtatt |
37835590 |
T |
|
| Q |
110 |
gtttggaaatggtttctcaggaaaagtgccttcagagttaagcaactgtagtttgcttgagtatttagacctttctgagaatagattcagtggaaagata |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37835591 |
gtttggaaatggtttctcaggaaaagtgccttcagagttaagcaactgtagtttgcttgagtatttagacctttctgagaatagattcagtggaaagata |
37835690 |
T |
|
| Q |
210 |
ccatctagtttgaataagttacaacttttacggtttatgagtctctcatccaatctgcttatcggtgaaattccagattccttgtttaaaattccatcct |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37835691 |
ccatctagtttgaataagttacaacttttacggtttatgagtctctcatccaatctgcttatcggtgaaattccagattccttgtttaaaattccatcct |
37835790 |
T |
|
| Q |
310 |
tggaagaagtaaatctgcacagtaaccttcttagtggtcctatcccgaccaatattggaaacttgactcatctattgaggttgtatctatatggtaatca |
409 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37835791 |
tggaagaagtaaacctgcacagtaaccttcttagtggtcctatcccgaccaatattggaaacttgactcatctattgaggttgtatctatatggtaatca |
37835890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 18 - 407
Target Start/End: Original strand, 37841118 - 37841507
Alignment:
| Q |
18 |
aatgtcatttctcttaacctcactagtcgtgggatttttggtcaacttgggacagaaattgtgaaccttcatcacttgcagacccttgtattgtttggaa |
117 |
Q |
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| T |
37841118 |
aatgtcatttccattaatctcactaaccatgggattcttggtcaacttggaccagaaattggaaacttttatcacttgcagaaccttgtattgttgggta |
37841217 |
T |
|
| Q |
118 |
atggtttctcaggaaaagtgccttcagagttaagcaactgtagtttgcttgagtatttagacctttctgagaatagattcagtggaaagataccatctag |
217 |
Q |
| |
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|||||||| ||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
37841218 |
atggtttcacaggaaatgtcccttcagagttaagcaattgtagtttgcttgagtatttagacctttctaagaatagattcagtggaaagataccatatag |
37841317 |
T |
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| Q |
218 |
tttgaataagttacaacttttacggtttatgagtctctcatccaatctgcttatcggtgaaattccagattccttgtttaaaattccatccttggaagaa |
317 |
Q |
| |
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|||||| ||||| ||| |||| | |||| | || || ||||||||||| | ||||||||||||||||| |||||| |||||| ||| | |||||| |
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| T |
37841318 |
tttgaaaaagttgcaaaatttaaaggttataggactgtcttccaatctgctgactggtgaaattccagattcattgtttgaaattcattccctcgaagaa |
37841417 |
T |
|
| Q |
318 |
gtaaatctgcacagtaaccttcttagtggtcctatcccgaccaatattggaaacttgactcatctattgaggttgtatctatatggtaat |
407 |
Q |
| |
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|| | || |||||||||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
37841418 |
gtgagcctacacagtaaccttctcagtggccctatcccaacaaatattggaaacttgactcatctattgaggttgtatctacatcgtaat |
37841507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 24 - 409
Target Start/End: Original strand, 37848880 - 37849265
Alignment:
| Q |
24 |
atttctcttaacctcactagtcgtgggatttttggtcaacttgggacagaaattgtgaaccttcatcacttgcagacccttgtattgtttggaaatggtt |
123 |
Q |
| |
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||||| ||||||||| |||||| ||||||||||||| ||||| ||||||| | || ||| |||| || |||| |||| | |||||||| |||| || |
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| T |
37848880 |
atttcccttaacctccctagtcaagggatttttggtcggcttggaccagaaataggaaatctttatcatttacagaaccttttgttgtttggtaatgctt |
37848979 |
T |
|
| Q |
124 |
tctcaggaaaagtgccttcagagttaagcaactgtagtttgcttgagtatttagacctttctgagaatagattcagtggaaagataccatctagtttgaa |
223 |
Q |
| |
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|||| |||||||| |||||||||||||| ||||||||||||||| || ||||||| ||||||||||| |||||||||||||||||||||| || |||||| |
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| T |
37848980 |
tctccggaaaagtaccttcagagttaagtaactgtagtttgcttcagaatttagagctttctgagaacagattcagtggaaagataccatatactttgaa |
37849079 |
T |
|
| Q |
224 |
taagttacaacttttacggtttatgagtctctcatccaatctgcttatcggtgaaattccagattccttgtttaaaattccatccttggaagaagtaaat |
323 |
Q |
| |
|
|| || || |||| ||||||| | | |||||| || | | ||||||||||||||||| |||||| |||||| |||| | |||||||| | |
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| T |
37849080 |
aaatttgcagaagttacagtttatggcattggcttccaatatgttgactggtgaaattccagattctttgtttcaaattcaatcccttgaagaagttagc |
37849179 |
T |
|
| Q |
324 |
ctgcacagtaaccttcttagtggtcctatcccgaccaatattggaaacttgactcatctattgaggttgtatctatatggtaatca |
409 |
Q |
| |
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|||||||||||||| ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37849180 |
ctgcacagtaacctacttagtggtcctatcccaacaaatattggaaacttgactcgtctattgaggttgtatctatatggtaatca |
37849265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 16 - 407
Target Start/End: Original strand, 37829793 - 37830184
Alignment:
| Q |
16 |
ataatgtcatttctcttaacctcactagtcgtgggatttttggtcaacttgggacagaaattgtgaaccttcatcacttgcagacccttgtattgtttgg |
115 |
Q |
| |
|
||||||||||||| |||| ||||||| ||| ||||||| ||||||||||||| ||||||||| |||||| |||||||||||| |||| | ||||| || |
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| T |
37829793 |
ataatgtcatttcccttagcctcactggtcatgggattattggtcaacttggaccagaaattggtaacctttatcacttgcagaaccttttgttgttcgg |
37829892 |
T |
|
| Q |
116 |
aaatggtttctcaggaaaagtgccttcagagttaagcaactgtagtttgcttgagtatttagacctttctgagaatagattcagtggaaagataccatct |
215 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| |||||| || ||||||| ||||||||||| ||||||||||||| ||| ||| | |
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| T |
37829893 |
taatggtttctcaggaaacgtgccttcagagttaagcaactgtagcttgcttcagaatttagatctttctgagaacagattcagtggaagtatatcatat |
37829992 |
T |
|
| Q |
216 |
agtttgaataagttacaacttttacggtttatgagtctctcatccaatctgcttatcggtgaaattccagattccttgtttaaaattccatccttggaag |
315 |
Q |
| |
|
||||||| ||||| ||| |||| |||| | || | || |||||||| || | ||| ||||||||||||| || ||| |||||| |||| | |||| |
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|
| T |
37829993 |
agtttgataaagttgcaaaatttaaagtttttaagattgtcttccaatcttctgactggtaaaattccagattctttatttgaaattcaatcccttgaag |
37830092 |
T |
|
| Q |
316 |
aagtaaatctgcacagtaaccttcttagtggtcctatcccgaccaatattggaaacttgactcatctattgaggttgtatctatatggtaat |
407 |
Q |
| |
|
|||| | ||||||| |||||||||||| || |||||| ||||||||||||||| ||||| ||||||| |||||||||||| || ||||| |
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| T |
37830093 |
aagtgagcctgcacaataaccttcttagcggcaatatcccaaccaatattggaaacatgactaatctattaaggttgtatctacatagtaat |
37830184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 24 - 388
Target Start/End: Original strand, 36864266 - 36864630
Alignment:
| Q |
24 |
atttctcttaacctcactagtcgtgggatttttggtcaacttgggacagaaattgtgaaccttcatcacttgcagacccttgtattgtttggaaatggtt |
123 |
Q |
| |
|
||||| |||||||| | ||||| || |||||||||||||||||| ||||||||| |||||| |||| ||| ||| ||| | |||||||| ||| || |
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| T |
36864266 |
atttcacttaaccttaatagtcatgagatttttggtcaacttggaccagaaattggaaacctttatcatttggagaatcttttgttgtttggtaataatt |
36864365 |
T |
|
| Q |
124 |
tctcaggaaaagtgccttcagagttaagcaactgtagtttgcttgagtatttagacctttctgagaatagattcagtggaaagataccatctagtttgaa |
223 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| | |||||||||||| ||||||||| |
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|
| T |
36864366 |
tctcaggaaaggtgccttcagagttaagcaactgtagtttgctagagaagttagacctttctgagaatagatttaatggaaagataccgcatagtttgaa |
36864465 |
T |
|
| Q |
224 |
taagttacaacttttacggtttatgagtctctcatccaatctgcttatcggtgaaattccagattccttgtttaaaattccatccttggaagaagtaaat |
323 |
Q |
| |
|
| | || | |||| || |||||| | || |||||| || | | ||||||||||||||||| || ||| ||||||| ||| | |||||||| | |
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| T |
36864466 |
aaggctaagaaatttaaagtctatgagattgtcttccaatttgttgactggtgaaattccagattctttatttgaaattccttcccttgaagaagtgagc |
36864565 |
T |
|
| Q |
324 |
ctgcacagtaaccttcttagtggtcctatcccgaccaatattggaaacttgactcatctattgag |
388 |
Q |
| |
|
||||||| ||||||||||||||| ||| || |||||||||||||||||||||||||||||||| |
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|
| T |
36864566 |
ctgcacaataaccttcttagtggaaatattccaaccaatattggaaacttgactcatctattgag |
36864630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 12281519 - 12281604
Alignment:
| Q |
60 |
caacttgggacagaaattgtgaaccttcatcacttgcagacccttgtattgtttggaaatggtttctcaggaaaagtgccttcaga |
145 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
12281519 |
caacttgggacagaaattgtgaaccttcataacttgcagacccttgtattgtttggaaatggtttctcaagaaaagtgccttcaga |
12281604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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