View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_low_8 (Length: 404)
Name: NF5218_low_8
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 14 - 386
Target Start/End: Complemental strand, 43860165 - 43859793
Alignment:
| Q |
14 |
aggagcacagacaattggagtaggacattgcaacttattcagcaacaggcttttcaacttcactggaaaaggtgatcaagatccatctctgaatccaact |
113 |
Q |
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| T |
43860165 |
aggagcacacacaattggagtaggacattgcaacttattcagcaacaggcttttcaacttcactggaaaaggtgatcaagatccatctctaaatccaact |
43860066 |
T |
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| Q |
114 |
tatgcaaatttcttgaagaccaaatgccaaggcctaagtgacaccactacaacagtcgaaatggatcctaatagctcaacaacatttgacaatgactatt |
213 |
Q |
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| T |
43860065 |
tacgcaaatttcttgaagaccaaatgccaaggcctaagtgacaccactacaacagtcgaaatggatcctaatagctcaacaacatttgacaatgactatt |
43859966 |
T |
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| Q |
214 |
atcctgtccttctacaaaacaagggtctcttcacatcagacgctgctcttctaacaaccaagcagtctagaaacattgttaatgaattggtttcacaaaa |
313 |
Q |
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| T |
43859965 |
atcctgtccttctacaaaacaagggtctcttcacatcagacgctgctcttctaacaaccaagcagtctagaaacattgttaatgaattggtttcacaaaa |
43859866 |
T |
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| Q |
314 |
caaattcttcactgagttttctcagtcaatgaagaggatgggagctattgaggttctcactggttcgaatgga |
386 |
Q |
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| T |
43859865 |
caaattcttcactgagttttctcagtcaatgaagaggatgggagctattgaggttctcactggttcgaatgga |
43859793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 180 - 386
Target Start/End: Complemental strand, 43858328 - 43858122
Alignment:
| Q |
180 |
cctaatagctcaacaacatttgacaatgactattatcctgtccttctacaaaacaagggtctcttcacatcagacgctgctcttctaacaaccaagcagt |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43858328 |
cctaatagctcaacaacatttgacaatgactattatcctgtccttctacaaaacaagggtctcttcacatcagacgctgctcttctaacaaccaagcagt |
43858229 |
T |
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| Q |
280 |
ctagaaacattgttaatgaattggtttcacaaaacaaattcttcactgagttttctcagtcaatgaagaggatgggagctattgaggttctcactggttc |
379 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43858228 |
ctaaaaacattgttaatgaattggtttcacaaaacaaattcttcactgagttttctcagtcaatgaagaggatgggagctattgaggttctcactggttc |
43858129 |
T |
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| Q |
380 |
gaatgga |
386 |
Q |
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| T |
43858128 |
gaatgga |
43858122 |
T |
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