View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_low_9 (Length: 400)
Name: NF5218_low_9
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Original strand, 8067462 - 8067832
Alignment:
| Q |
18 |
aaatcaacctcacaaacatgataatggagtttcttcgtattgaccgaaattatattatattgagaatcagtcaactaaagtacaattttttgtatctttg |
117 |
Q |
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| T |
8067462 |
aaatcaacctcacaaacatgataatggagtttcttcgtattgaccgaaattatattatattgagaatcagtcaactaaagtacaattttttgtatctttg |
8067561 |
T |
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| Q |
118 |
aactgaattcatataatattgagaattagtcaactaaaatataattttggtaataaccaaaacatcataaaaccctacttataatttccatattactctt |
217 |
Q |
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| T |
8067562 |
aactgaattcatataat--tgagaattagtcaactaaaatataattttggtaataaccaaaacatcataaaaccctgcttataatttccatattaccctt |
8067659 |
T |
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| Q |
218 |
ctaggtattgcaaacatgtatcgaaccaaacacaggatacacataacattatcatgatttcatataagaaaacatatatcaagcaactatcatgatataa |
317 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8067660 |
ctaggtattgcaaacatgtatcaaaccaaacacaggatacacataacattatcatgatttcatataagcaaacatatatcaagcaactatcatgatataa |
8067759 |
T |
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| Q |
318 |
acatcagatcaatcctgatgaatatgaccaactctcaataggtaatcgttaggttactctattttagtctctg |
390 |
Q |
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| T |
8067760 |
acatcagaccaatcctgatgaatatgaccaactctcaataggtaatcgttaggttactctattttagtctctg |
8067832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 123 - 239
Target Start/End: Complemental strand, 8080605 - 8080486
Alignment:
| Q |
123 |
aattcatataatattgagaattagtcaactaaaatataattttggtaataaccaaaaca---tcataaaaccctacttataatttccatattactcttct |
219 |
Q |
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| T |
8080605 |
aattcatattatattgagaatcaattaactaaagtataattttggtaataaccaaaacaacatcataaaaccctacttataatttccatattaccattct |
8080506 |
T |
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| Q |
220 |
aggtattgcaaacatgtatc |
239 |
Q |
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| T |
8080505 |
aggtattgcaaacatatatc |
8080486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 290 - 390
Target Start/End: Complemental strand, 8080170 - 8080071
Alignment:
| Q |
290 |
catatatcaagcaactatcatgatataaacatcagatcaatcctgatgaatatgaccaactctcaataggtaatcgttaggttactctattttagtctct |
389 |
Q |
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| T |
8080170 |
catatattaaccaactatcatcatataaacatcagatcaatc-tgttgaaaatgaccaactttcaataggtaatcattaggttactctattgtagtctct |
8080072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 8071675 - 8071558
Alignment:
| Q |
119 |
actgaattcatataatattgagaattagtcaactaaaatataattttggtaataaccaaaaca---tcataaaaccctacttataatttccatattactc |
215 |
Q |
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||||||||||| | ||||||| ||| ||||||||||| |||| ||||||| ||||||||||| |||||||||||| ||||||||||||||||||| | |
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| T |
8071675 |
actgaattcatgttatattgaaaatcagtcaactaaactatagctttggtagtaaccaaaacaacatcataaaaccctccttataatttccatattaccc |
8071576 |
T |
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| Q |
216 |
ttctaggtattgcaaaca |
233 |
Q |
| |
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|||| ||||||||||||| |
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| T |
8071575 |
ttcttggtattgcaaaca |
8071558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 8080289 - 8080239
Alignment:
| Q |
242 |
accaaacacaggatacacataacattatcatgatttcatataagaaaacat |
292 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
8080289 |
accaaactcaggatacacatagcattatcatgatttcatataagcaaacat |
8080239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 8080630 - 8080563
Alignment:
| Q |
39 |
taatggagtttcttcgtattgaccgaaattatattatattgagaatcagtcaactaaagtacaatttt |
106 |
Q |
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|||||||||||||||||||| || || | |||||||||||||||||| | |||||||||| |||||| |
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| T |
8080630 |
taatggagtttcttcgtattaacaaaattcatattatattgagaatcaattaactaaagtataatttt |
8080563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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