View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5219-Insertion-2 (Length: 1020)
Name: NF5219-Insertion-2
Description: NF5219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5219-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 749; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 749; E-Value: 0
Query Start/End: Original strand, 8 - 815
Target Start/End: Original strand, 44799817 - 44800627
Alignment:
| Q |
8 |
gttctttcatggaaacaaagagttaatataattctaggtgttgctgctgctcttacctatcttcatgaagaatgtgagagacaaatcattcatagagatg |
107 |
Q |
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| T |
44799817 |
gttctttcatggaaacaaagagttaatataattctaggtgttgctgctgctcttacctatcttcatgaagaatgtgagagacaaatcattcatagagatg |
44799916 |
T |
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| Q |
108 |
tgaagacatgtaacataatgcttgatgttgatttcaatgcaaagcttggtgattttggactagcagaagtgtatgaacatagttctagtacaagggatgc |
207 |
Q |
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| T |
44799917 |
tgaagacatgtaacataatgcttgatgttgatttcaatgcaaagcttggtgattttggactagcagaagtgtatgaacatagttctagtacaagggatgc |
44800016 |
T |
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| Q |
208 |
tactataccagcaggaacaatgggatatcttgcacccgaatatgtttattcgggtgctccaaccgtgaagaccgatgtatatagttttggtgtcgtgata |
307 |
Q |
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| T |
44800017 |
tactataccagcaggaacaatgggatatcttgcacccgaatatgtttattcgggtgttccaaccgtgaagactgatgtatatagttttggtgtcgtgata |
44800116 |
T |
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| Q |
308 |
attgaagttgcgaccgggaggaagcctgttgcagacgatggaactgtcattggtgactatgtttggaaactgtgggaaaagaatagactcgttgaggcgg |
407 |
Q |
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| T |
44800117 |
attgaagttgcgactgggaggaagcctgttgcagacgacggaactgtcattggtgactatgtttggagtctgtgggaaaagaatagactcgttgaggcgg |
44800216 |
T |
|
| Q |
408 |
ctgatccgaaattgatgggggaatttgatgtaattgagatggagaggatgttattggtagggcttgtttgtgtgcatccagattatgagaagaggcctag |
507 |
Q |
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| T |
44800217 |
ctgatccgaaattgatgggggaatttgatgtaattgagatggagaggatgttattggtagggcttgtttgtgtgcatccagattatgagaagagacctag |
44800316 |
T |
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| Q |
508 |
agttagagatgcagctagaatgataaagaaagaagcatcacttccattgttgcctacaactaaaccatgggtgagaattatgcctgtttgtcctaatgac |
607 |
Q |
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| T |
44800317 |
agttagagatgcagctagaatgataaagaaagaagcaccacttccattgttgcctacaactaaaccatgggtgaggattatgcctgtttgtcctaatgac |
44800416 |
T |
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| Q |
608 |
acacctgaaacacaaga---tgttggtgactgggttagtaatgatgaggctccttatttgactcctaggagccaattttactagaatttgattttgtata |
704 |
Q |
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| T |
44800417 |
acacctgaaactcaagatgttgttggtgattgggttagtaatgatgaggctccttatttgactcctaggagccaattttactagaatttgattttgtata |
44800516 |
T |
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| Q |
705 |
tacattttgaagtcaaggttatttttagatttttgtataatgctcttaggccataagaaaaagttagttattgattaataacaatatccaattgaaattt |
804 |
Q |
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| T |
44800517 |
tacattttgaagtcaaggttatttttagatttttgtataatgcttttaggccataagaaaaagttagttattgattaataacaatatccaattgaaattt |
44800616 |
T |
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| Q |
805 |
gcaaccaagtc |
815 |
Q |
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| T |
44800617 |
gcaaccaagtc |
44800627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 895 - 973
Target Start/End: Original strand, 44800702 - 44800778
Alignment:
| Q |
895 |
gcctctagtttagtttgatgtaaaaaattggactcataatagacttcattaacttaaattgacattgtttcaagtttaa |
973 |
Q |
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|||||| |||||||| ||||||||| |||||||||||||||| |||||||||||||| ||||||||||||| ||||| |
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| T |
44800702 |
gcctctggtttagtt-gatgtaaaa-attggactcataataggactcattaacttaaatggacattgtttcaaatttaa |
44800778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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