View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5219-Insertion-3 (Length: 907)
Name: NF5219-Insertion-3
Description: NF5219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5219-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 482; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 8 - 522
Target Start/End: Complemental strand, 34729273 - 34728763
Alignment:
| Q |
8 |
gtaatgactatgtttattatctcacttaactgcattttcaaaaaaggtgagcttaatctgatcatactaaaagtcattttatttgtcatatgtcaaagtg |
107 |
Q |
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| T |
34729273 |
gtaatgactatgtttattatctcacttaactgcattttcaaaaaaggtgagcttaatctgatcatactaaaagtcattttatttgtcatatgtcaaagtg |
34729174 |
T |
|
| Q |
108 |
cagtggtaattttgaacattgtagagcctgtttgggaattattttcatctcatttctgtttccaaatattggtaaccttcaataaaggatttaaaggata |
207 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34729173 |
cagtggtaattttgaacattgtagagcccgtttgggaattattttcatctcatttctgtttccaaatattggtaaccttcaataaaggatttaaaggata |
34729074 |
T |
|
| Q |
208 |
tacagtgttggtgtaaaatagttttacattgactgacatccaatgaaaacctattgttttagcggtcacctcactatttattataaggatattttgaaat |
307 |
Q |
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| T |
34729073 |
tacagtgttggtgtaaaatagttttacattgag----atccaatgaaaacctattgttttagcggtcacctcactatttattataaggatattttgaaat |
34728978 |
T |
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| Q |
308 |
tagtagtacggcatggataaattttggtttctcattggatgtcggagtataagctcattgaactctctttataattccaactgaaaataaaaaatgtttt |
407 |
Q |
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| T |
34728977 |
tagtagtacggcatggataaattttggtttctcattggatgtcggagtataagctcattgaactctctttataattccaactgaaaataaaaaatgtttt |
34728878 |
T |
|
| Q |
408 |
ctgaatccaaaataaccctcgtcatctgttaattatataaatctaatatatgttttgttctaatgccaattataacagcttgtcaactaaaacctttata |
507 |
Q |
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| T |
34728877 |
ctgaatccaaaataaccctcgtcatctgttaattatataaatctaatatatgttctgttctaatgccaattataacagcttgtcaactaaaacctttata |
34728778 |
T |
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| Q |
508 |
ttcctttgcttactt |
522 |
Q |
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|||||||||| |||| |
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| T |
34728777 |
ttcctttgctaactt |
34728763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 568 - 907
Target Start/End: Complemental strand, 34728769 - 34728429
Alignment:
| Q |
568 |
ctaacttcataattttaattatttcaatctatgatagaacatacattatgacgtaagttgatcatgtagccgatctcacttaattgttgattttgtgaca |
667 |
Q |
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| T |
34728769 |
ctaacttcataattttaattatttcaatctatgatagaacatacattatgacgtaagttgatcatgtagccgaccccacttaattgttgattttgtgaca |
34728670 |
T |
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| Q |
668 |
aataagtcaactttgtaacaaaaattttcaaaataatcaaatcgtcacacctcaatttctttaacatttatcaaatgagtccctccgtcagtcaattcat |
767 |
Q |
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| T |
34728669 |
aacaagtcaactttgtaacaaaatttttcaaaataatcaaatcgtcacacctcaatttctttaacatttatcaaatgagtccctccgtcagtcaatttat |
34728570 |
T |
|
| Q |
768 |
gtgttagatgctttaacgttcaatcttgaacattgaactagccaaattaaagacgaagtagcttac--------gttaagacttaagattaagaagaaag |
859 |
Q |
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| T |
34728569 |
gtgttagatgctttaacgttcaatcttgaaca------tagccaaattaaagatgaagtagcttactcagggtagttaagacttaagattaagaag-aag |
34728477 |
T |
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| Q |
860 |
gttgtttgattttgtcttttctggtgggccacctgtccactgtcagtc |
907 |
Q |
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| T |
34728476 |
gttgtttgattttgtcttttctggtgggccacctgtccactgtcagtc |
34728429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 218 - 373
Target Start/End: Complemental strand, 34724896 - 34724747
Alignment:
| Q |
218 |
gtgtaaaatagttttacattgactgacatccaatgaaaacctattgttttagcggtcacctcactatttattataaggatattttgaaattagtag--ta |
315 |
Q |
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| T |
34724896 |
gtgtaaaatagttttaca----ctaacatccaatgaaaacctattgttttgtcaatcacctcactattg----taaggatgttttgagattagtagagta |
34724805 |
T |
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| Q |
316 |
cggcatggataaattttggtttctcattggatgtcggagtataagctcattgaactct |
373 |
Q |
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| T |
34724804 |
tgatatggataaatggtggtttctcatctgatatcagagtacatgctcattgaactct |
34724747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 34725095 - 34725032
Alignment:
| Q |
64 |
tctgatcatactaaaagtcattttatttgtcatatgtcaaagtgcagtggtaattttgaacatt |
127 |
Q |
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||||||||||| |||| ||||||| |||||||||| ||||||||||| ||| |||||||||| |
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| T |
34725095 |
tctgatcataccaaaaatcattttctttgtcatatagcaaagtgcagttctaaatttgaacatt |
34725032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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