View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5219-Insertion-5 (Length: 720)

Name: NF5219-Insertion-5
Description: NF5219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5219-Insertion-5
NF5219-Insertion-5
[»] chr1 (3 HSPs)
chr1 (144-720)||(50526539-50527115)
chr1 (10-88)||(50526146-50526224)
chr1 (77-119)||(50526232-50526274)


Alignment Details
Target: chr1 (Bit Score: 569; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 144 - 720
Target Start/End: Original strand, 50526539 - 50527115
Alignment:
Q  144 ggatgaagacatgaaccaaagaatttacaaaagggattatcacctaagctgccttttaactatacaattcgccacttctacaaaggttgcagcctattct 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50526539 ggatgaagacatgaaccaaagaatttacaaaagggattatcacctaagctgccttttaactatacaattcgccacttctacaaaggttgcagcctattct 50526638  T
Q  244 aatattctaataaatttaatattcatgtcacataattcttcctccccactagtttctagtgaacattaaccatccaaaaaagttgaagtcattttgaatt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50526639 aatattctaataaatttaatattcatgtcacataattcttcctccccactagtttctagtgaacattaaccatccaaaaaagttgaagtcattttgaatt 50526738  T
Q  344 gaaatttataagcatataatgattaaattatatatagatctactacactttgaaactttggtccacactttcttttgactccacattgatttcaccattc 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50526739 gaaatttataagcatataatgattaaattatatatagatctactacactttgaaactttggtccacactttcttttgactccacattgatttcaccattc 50526838  T
Q  444 ttttgaccaagagaaccatcttcttcagcatcaaagctggcatgaacactgtagaaaatatagaatagcactgcaacagcagaaaagactccaaatctaa 543  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50526839 ttttgaccaagagaaccatctccttcagcatcaaagctggcatgaacactgtagaaaatatagaatagcactgcaacagcagaaaagactccaaatctaa 50526938  T
Q  544 cataggatggcccatcaagtgatcccagcaaaaacaaattcaaaaagattgaaattgctggtatccatggcataagtggtacaccccaaaattctggctt 643  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50526939 cataggatggcccatcaagtgatcccagcaaaaacaaattcaaaaagattgaaattgctggtatccatggcataagtggtacaccccaaaattctggctt 50527038  T
Q  644 cctagcttgagggacagtgaaatgaaaaagttgcaatattactacagcaagtacaccacaagcacttaacatccctg 720  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50527039 cctagcttgagggacagtgaaatgaaaaagttgcaatattactacagcaagtacaccacaggcacttaacatccctg 50527115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 50526146 - 50526224
Alignment:
Q  10 aatcacatcagttatccatcaccaaaacatgcgcttatgtggctcaattttttcatattgttctttaatataaataaaa 88  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  50526146 aatcacatcagttatccatcaccaaaacatgcgctcatgtggctcaattttttcatattgttctttaatataaataaaa 50526224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 50526232 - 50526274
Alignment:
Q  77 atataaataaaatttagctgttggaagtcagagagtttataag 119  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  50526232 atataaataaaatttagctgttggaagtcagagagtttataag 50526274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University