View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5219-Insertion-6 (Length: 518)

Name: NF5219-Insertion-6
Description: NF5219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5219-Insertion-6
NF5219-Insertion-6
[»] scaffold0211 (2 HSPs)
scaffold0211 (10-517)||(24623-25125)
scaffold0211 (230-292)||(24461-24524)
[»] scaffold0084 (3 HSPs)
scaffold0084 (10-382)||(30828-31202)
scaffold0084 (285-517)||(18190-18431)
scaffold0084 (410-517)||(30720-30828)
[»] chr4 (12 HSPs)
chr4 (383-517)||(22317413-22317550)
chr4 (150-219)||(42454556-42454625)
chr4 (10-73)||(35788691-35788754)
chr4 (150-221)||(41635658-41635729)
chr4 (10-73)||(53828512-53828575)
chr4 (160-221)||(18553065-18553126)
chr4 (20-73)||(21685030-21685083)
chr4 (10-73)||(22231297-22231360)
chr4 (10-49)||(22445508-22445547)
chr4 (150-219)||(5628088-5628156)
chr4 (154-191)||(21823393-21823430)
chr4 (10-70)||(4464330-4464390)
[»] chr6 (11 HSPs)
chr6 (158-220)||(16434123-16434185)
chr6 (150-221)||(22259488-22259559)
chr6 (150-213)||(3634199-3634262)
chr6 (372-517)||(19122392-19122541)
chr6 (10-71)||(3680046-3680107)
chr6 (8-73)||(33494571-33494636)
chr6 (10-73)||(4868802-4868865)
chr6 (170-221)||(6038750-6038801)
chr6 (10-49)||(8001539-8001578)
chr6 (8-73)||(15082131-15082196)
chr6 (179-220)||(24203759-24203800)
[»] chr8 (8 HSPs)
chr8 (150-221)||(33053638-33053709)
chr8 (361-459)||(23433743-23433843)
chr8 (160-221)||(13109635-13109696)
chr8 (149-221)||(11647583-11647654)
chr8 (10-61)||(12317090-12317141)
chr8 (14-49)||(38475803-38475838)
chr8 (10-69)||(38476074-38476133)
chr8 (10-64)||(422442-422496)
[»] chr7 (8 HSPs)
chr7 (386-517)||(19143532-19143665)
chr7 (386-517)||(20742931-20743064)
chr7 (150-220)||(4587680-4587750)
chr7 (10-63)||(21821848-21821901)
chr7 (10-73)||(21861326-21861389)
chr7 (10-73)||(25620168-25620231)
chr7 (10-64)||(44874567-44874621)
chr7 (150-191)||(240522-240563)
[»] chr3 (10 HSPs)
chr3 (160-220)||(17132470-17132530)
chr3 (10-73)||(16239623-16239686)
chr3 (8-73)||(9272993-9273058)
chr3 (10-73)||(1723065-1723128)
chr3 (10-49)||(22729156-22729195)
chr3 (10-73)||(54368548-54368611)
chr3 (10-73)||(54567924-54567987)
chr3 (12-49)||(13824970-13825007)
chr3 (10-71)||(16926938-16926999)
chr3 (472-517)||(21528732-21528777)
[»] chr2 (13 HSPs)
chr2 (361-517)||(8684845-8685004)
chr2 (150-220)||(35406103-35406173)
chr2 (160-219)||(21625154-21625213)
chr2 (162-221)||(31483251-31483310)
chr2 (10-47)||(13210584-13210621)
chr2 (160-221)||(31475539-31475600)
chr2 (363-482)||(16153064-16153186)
chr2 (150-221)||(25473213-25473283)
chr2 (10-73)||(28407782-28407845)
chr2 (10-49)||(40149225-40149264)
chr2 (10-73)||(40379433-40379496)
chr2 (150-188)||(20515848-20515886)
chr2 (8-49)||(93614-93655)
[»] chr5 (11 HSPs)
chr5 (397-517)||(9823558-9823678)
chr5 (10-73)||(18333688-18333751)
chr5 (10-73)||(24531631-24531694)
chr5 (150-220)||(30985816-30985885)
chr5 (160-213)||(9033531-9033586)
chr5 (10-73)||(8098349-8098412)
chr5 (10-73)||(41666982-41667045)
chr5 (383-517)||(19570344-19570483)
chr5 (361-478)||(12046493-12046616)
chr5 (150-219)||(16809342-16809411)
chr5 (20-73)||(18333464-18333517)
[»] chr1 (11 HSPs)
chr1 (149-220)||(4521868-4521939)
chr1 (149-219)||(24115483-24115553)
chr1 (10-73)||(51589838-51589901)
chr1 (150-188)||(24634052-24634090)
chr1 (150-188)||(44787643-44787681)
chr1 (20-73)||(4112539-4112592)
chr1 (150-187)||(11324636-11324673)
chr1 (150-187)||(11482657-11482694)
chr1 (20-73)||(31181512-31181565)
chr1 (10-71)||(38668159-38668220)
chr1 (13-73)||(4112998-4113058)
[»] scaffold0062 (1 HSPs)
scaffold0062 (433-517)||(980-1067)
[»] scaffold0346 (1 HSPs)
scaffold0346 (160-211)||(12408-12459)
[»] scaffold0004 (1 HSPs)
scaffold0004 (363-427)||(382026-382094)


Alignment Details
Target: scaffold0211 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 10 - 517
Target Start/End: Original strand, 24623 - 25125
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggttaactaaaaatgagtgtgacacttgttcaacatgat 109  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||   |||||||||||||| |||||||||||||||    
T  24623 tctgataccatcttagaatttgtggttgggcttaatacaacgccataaaatcggcttgtgaggttaaactaaaatgagtgtgacgcttgttcaacatgat 24722  T
Q  110 caatggtggagccnnnnnnnnnnnnnnctcgatgggtcactgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatca 209  Q
    ||||| |||||||              |||| |||||| |||||||||||| ||||||||||||||||||||||||||||||   || |||||| |||||    
T  24723 caatgatggagccaaaaaaaaaat---ctcggtgggtcgctgtttaccgatatttttgataaacaataagactagttttaaa---tttcttgcaggatca 24816  T
Q  210 aactagaaatcccaaatggccaaataaacaatggtgaatagcttggcaggaagagaaaacataacaaaa-gttagttagagccacactaccaaatggcca 308  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||    
T  24817 aactaaaaatcccaaatggccaaataaacaatggtaaacagcttggcaggaagagaaaacatcacaaaaagttagtcagagccacactaccaaatggcca 24916  T
Q  309 aatgattgcatagctgcaaactaaataatcaagtagaagtcactcaacatctgctttttgtagtttctttttctgtgttaaaacttgatcagaatctgag 408  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| | ||||||||||||||||||||||||||||||||||||     
T  24917 aatgattgcatagctgcaaactacataatcaagtagaagtcacccaa-atctgctttttgcaatttctttttctgtgttaaaacttgatcagaatctgaa 25015  T
Q  409 gtatgtagattttgactcatggtctgaatgcagcggattaaatacagaacac-aagataaagagacagagaaagaaagtaaacacaaagcaattttatat 507  Q
     |||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||| | |||| ||||||||| |||||||||||    
T  25016 atatgtagattttgactcatggtttgaatgcagcggattaaatacataacacaaagataaagagacagagagacaaagcaaacacaaaacaattttatat 25115  T
Q  508 tggttcctcc 517  Q
    ||||||||||    
T  25116 tggttcctcc 25125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 24461 - 24524
Alignment:
Q  230 caaataaacaatggtg-aatagcttggcaggaagagaaaacataacaaaagttagttagagcca 292  Q
    ||||||||||| |||| || |||||||||||||||| |||||| |||| ||||| |||||||||    
T  24461 caaataaacaaaggtgcaacagcttggcaggaagagcaaacatcacaacagttaattagagcca 24524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 382
Target Start/End: Complemental strand, 31202 - 30828
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggtt-aactaaaaatgagtgtgacacttgttcaacatga 108  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||  ||||| || ||| |||||||||| |||| ||||||||||||||    
T  31202 tctgataccatcttagaatttgtggttgggcttaacataatgccataaaataggctagtgagattgaacgaaaaatgagtttgacgcttgttcaacatga 31103  T
Q  109 tcaatggtggagccnnnnnnnnnnnnnnc-tcgatgggtcactgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagat 207  Q
    ||||||||||||||                | | |||||| |||||||||||| ||||  |||| ||||| ||||||||||||||||||||||||| |||    
T  31102 tcaatggtggagccaaaaaaaaataaaaaattggtgggtcgctgtttaccgattttttaaataatcaatatgactagttttaaaatattgcttgcatgat 31003  T
Q  208 caaactagaaatcccaaatggccaaataaacaatggtgaatagcttggcaggaagagaaaacataacaaaagttagttagagccacactaccaaatggcc 307  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  31002 caaactagaaatcccaaatggccaaataaacaatggtgaacagcttggcaggaagagaaaacatcacaaaagttagtcagagccacactaccaaatggcc 30903  T
Q  308 aaatgattgcatagctgcaaactaaataatcaagtagaagtcactcaacatctgctttttgtagtttctttttct 382  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||    
T  30902 aaatgattgcatagctgcaaactaaataatcaagtagaagtcacccaacatctgctttttgcagtctctttttct 30828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 285 - 517
Target Start/End: Complemental strand, 18431 - 18190
Alignment:
Q  285 tagagccacactaccaaatggccaaatgattgcatagctgcaaactaaataatcaagtagaagtcactcaacatctgctttttgtagtttctttttc--t 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||  |    
T  18431 tagagccacactaccaaatggccaaatgattgcatagctgcaaactaaataattaagtagaagtcacccaacatctgctttttgcagtttctttttctat 18332  T
Q  383 gtgttaaaacttgatcagaatctgaggtatgtagattttgactcatggtctgaatgcagcggattaaatacagaacac-aagataa------agagacag 475  Q
    |||||||||  | |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||      ||||||||    
T  18331 gtgttaaaagcttatcagaatttgagatatgtagattttgactcatggtctgaatgcagcggattaaatacaaaacacaaagataaagagacagagacag 18232  T
Q  476 agaaagaaagtaaacacaaagcaattttatattggttcctcc 517  Q
    |||||||||| | | | ||| |||||||||||||||||||||    
T  18231 agaaagaaagcatagataaatcaattttatattggttcctcc 18190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 410 - 517
Target Start/End: Complemental strand, 30828 - 30720
Alignment:
Q  410 tatgtagattttgactcatggtctgaatgcagcggattaaatacagaacac-aagataaagagacagagaaagaaagtaaacacaaagcaattttatatt 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||| |||||| ||||||||| ||||||||||||    
T  30828 tatgtagattttgactcatggtctgaatgcagcggattaaatacagaacacaaagataaaaatacaaagagagaaagcaaacacaaatcaattttatatt 30729  T
Q  509 ggttcctcc 517  Q
    |||||||||    
T  30728 ggttcctcc 30720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 383 - 517
Target Start/End: Complemental strand, 22317550 - 22317413
Alignment:
Q  383 gtgttaaaacttgatcagaatctgaggtatgtagattttgactcatggtctgaatgcagcggattaaatacagaacac-aagataaagagac--agagaa 479  Q
    ||||||| ||||||||||||| ||||||||  |||||||||   |  |||||||||||||||||||| |||||||||| |||||||||||||  |  ||     
T  22317550 gtgttaagacttgatcagaatatgaggtatacagattttgatatagagtctgaatgcagcggattaagtacagaacacaaagataaagagacgaaacgag 22317451  T
Q  480 agaaagtaaacacaaagcaattttatattggttcctcc 517  Q
    |||||||| ||||||| |||||||||| ||||||||||    
T  22317450 agaaagtagacacaaaacaattttatactggttcctcc 22317413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 42454556 - 42454625
Alignment:
Q  150 tgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaat 219  Q
    ||||||||| ||||| || |||||||||||| |||||||||| | || |||||| |||||||||||||||    
T  42454556 tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaat 42454625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 35788754 - 35788691
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt 73  Q
    |||||||||||||||||| | |||||||||| ||||||||  |||||||| |||| ||||||||    
T  35788754 tctgataccatcttagaaatcgtggttgggcctaacacaaccccataaaaccggcttgtgaggt 35788691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 41635729 - 41635658
Alignment:
Q  150 tgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatcc 221  Q
    ||||||||| ||||||||  |||| ||||||||||||||||| | || |||| |||||| ||||||||||||    
T  41635729 tgtttaccggtgtttttggaaaaccataagactagttttaaattgttacttgaaagatcgaactagaaatcc 41635658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 53828512 - 53828575
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt 73  Q
    |||||||||||||||||| |||||||||||| ||||||||  ||| ||||||||| | ||||||    
T  53828512 tctgataccatcttagaaattgtggttgggcctaacacaaccccacaaaatcggcttatgaggt 53828575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 18553065 - 18553126
Alignment:
Q  160 tgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatcc 221  Q
    |||||||  ||||||||||||||||||||||||| || ||||   |||||||||||||||||    
T  18553065 tgttttttgtaaacaataagactagttttaaaatgttacttgtgggatcaaactagaaatcc 18553126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 21685083 - 21685030
Alignment:
Q  20 tcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt 73  Q
    |||||||| |||||||||||||||||||||  ||| ||||||||| ||||||||    
T  21685083 tcttagaaattgtggttgggcttaacacaaccccacaaaatcggcttgtgaggt 21685030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 22231297 - 22231360
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt 73  Q
    |||||||||||||||||| | |||||||||| ||||||||  ||| |||| |||| ||||||||    
T  22231297 tctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggt 22231360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 22445547 - 22445508
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaa 49  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  22445547 tctgataccatcttagaatttgtggttgggtctaacacaa 22445508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 5628156 - 5628088
Alignment:
Q  150 tgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaat 219  Q
    ||||||||| |||||||| ||||||| | | ||| |||||||||||| |||||| |||||||||| ||||    
T  5628156 tgtttaccggtgtttttggtaaacaagacg-ctaattttaaaatattacttgcaggatcaaactaaaaat 5628088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 21823393 - 21823430
Alignment:
Q  154 taccgatgtttttgataaacaataagactagttttaaa 191  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  21823393 taccggtgtttttggtaaacaataagactagttttaaa 21823430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 4464390 - 4464330
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtga 70  Q
    |||||||||||||||||||| |||||||||  ||||| ||  ||| ||||||||| |||||    
T  4464390 tctgataccatcttagaattcgtggttgggtctaacaaaaccccacaaaatcggcttgtga 4464330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 16434123 - 16434185
Alignment:
Q  158 gatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatc 220  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  16434123 gatgtttttgataaacaataagactagttttaaaatgttgcttgcaggattaaactagaaatc 16434185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 22259559 - 22259488
Alignment:
Q  150 tgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatcc 221  Q
    ||||||||| |||||||  |||||||||||||||||||||||  |||||||||| ||| |||||||||||||    
T  22259559 tgtttaccgctgttttttgtaaacaataagactagttttaaataattgcttgcaggatgaaactagaaatcc 22259488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 3634199 - 3634262
Alignment:
Q  150 tgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaact 213  Q
    ||||||||| |||||||| |||||||||||||||||||||||  ||| |||||| |||||||||    
T  3634199 tgtttaccggtgtttttggtaaacaataagactagttttaaataattacttgcaggatcaaact 3634262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 517
Target Start/End: Original strand, 19122392 - 19122541
Alignment:
Q  372 tttctttttctgtgt-taaaacttgatcagaatctgaggtatgtagattttgactcatggtctgaatgcagcggattaaatacagaacac-aagataaag 469  Q
    ||||||||||| ||| | ||| ||| ||| ||| ||||||||  ||||| ||||| |  || ||||||||||| |||||||||||  ||| |||||||||    
T  19122392 tttctttttctctgtgttaaatttggtcataatatgaggtattcagattctgacttagagtgtgaatgcagcgaattaaatacagttcacaaagataaag 19122491  T
Q  470 ag--acagagaaagaaagtaaacacaaagcaattttatattggttcctcc 517  Q
    ||  ||||||| |||||| | |||||||||| ||||||| | ||||||||    
T  19122492 agacacagagagagaaagcagacacaaagcacttttatactagttcctcc 19122541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 3680107 - 3680046
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgag 71  Q
    |||||||||||||||||| |||||||||||| ||||||||  ||| ||||||| | ||||||    
T  3680107 tctgataccatcttagaaattgtggttgggcctaacacaaccccacaaaatcgacttgtgag 3680046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 33494636 - 33494571
Alignment:
Q  8 gttctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt 73  Q
    |||||||||||||||||||| | |||||||||| ||||||||  ||| |||| |||| ||||||||    
T  33494636 gttctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtgaggt 33494571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 4868802 - 4868865
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt 73  Q
    |||||||||||||||||| | |||||||||| ||||||||  ||| |||| |||| ||||||||    
T  4868802 tctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggt 4868865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 6038750 - 6038801
Alignment:
Q  170 aaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatcc 221  Q
    |||||||| |||||||||||||  ||| |||||| |||||||||||||||||    
T  6038750 aaacaatatgactagttttaaataattacttgcaggatcaaactagaaatcc 6038801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 8001539 - 8001578
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaa 49  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  8001539 tctgataccatcttagaaattgtggttgggcctaacacaa 8001578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 15082131 - 15082196
Alignment:
Q  8 gttctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt 73  Q
    ||||||||||||| |||||| | ||| |||||| ||||||||| ||| |||| |||| ||||||||    
T  15082131 gttctgataccatattagaaatcgtgtttgggcctaacacaatcccacaaaaccggcttgtgaggt 15082196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 24203800 - 24203759
Alignment:
Q  179 gactagttttaaaatattgcttgcaagatcaaactagaaatc 220  Q
    ||||| |||||||||||| ||||||| |||||||||||||||    
T  24203800 gactaattttaaaatattacttgcaaaatcaaactagaaatc 24203759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 33053638 - 33053709
Alignment:
Q  150 tgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatcc 221  Q
    ||||||||| |||||||| ||||||||||||||||||||||| | || |||||| |||||||||||||||||    
T  33053638 tgtttaccggtgtttttggtaaacaataagactagttttaaattgttacttgcaggatcaaactagaaatcc 33053709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 459
Target Start/End: Complemental strand, 23433843 - 23433743
Alignment:
Q  361 gctttttgtagtttctttttc--tgtgttaaaacttgatcagaatctgaggtatgtagattttgactcatggtctgaatgcagcggattaaatacagaac 458  Q
    ||||||||||| |||||||||  |||||||||||||| ||| ||||||| ||||| | |||||||| |||  ||||| || ||||||||||  |||||||    
T  23433843 gctttttgtagcttctttttccgtgtgttaaaacttggtcataatctgaagtatgcaaattttgacacatattctgattgtagcggattaagaacagaac 23433744  T
Q  459 a 459  Q
    |    
T  23433743 a 23433743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 13109635 - 13109696
Alignment:
Q  160 tgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatcc 221  Q
    |||||||| ||||||||||||||||||||||||| || || | | ||||||||| |||||||    
T  13109635 tgtttttggtaaacaataagactagttttaaaatgttactcgtaggatcaaactggaaatcc 13109696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 11647654 - 11647583
Alignment:
Q  149 ctgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatcc 221  Q
    |||||||||| |||| ||| ||||||| ||||||| | ||||||  ||||||||| |||||||||||||||||    
T  11647654 ctgtttaccggtgttcttggtaaacaagaagactaatcttaaaag-ttgcttgcatgatcaaactagaaatcc 11647583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 12317141 - 12317090
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatc 61  Q
    |||||||||||||||||| | |||||||||| ||||||||| ||| ||||||    
T  12317141 tctgataccatcttagaaatcgtggttgggcctaacacaatcccacaaaatc 12317090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 38475838 - 38475803
Alignment:
Q  14 ataccatcttagaatttgtggttgggcttaacacaa 49  Q
    ||||||||||||||||||||||||||| ||||||||    
T  38475838 ataccatcttagaatttgtggttgggcctaacacaa 38475803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 38476133 - 38476074
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtg 69  Q
    |||||||||||||||||| |||||||||||| ||||| ||| ||| |||| |||| ||||    
T  38476133 tctgataccatcttagaaattgtggttgggcctaacataatcccacaaaaccggcttgtg 38476074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 422442 - 422496
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggc 64  Q
    |||||||||||||||||| ||||||||||||  |||||||  ||| |||||||||    
T  422442 tctgataccatcttagaaattgtggttgggccaaacacaaccccacaaaatcggc 422496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 386 - 517
Target Start/End: Complemental strand, 19143665 - 19143532
Alignment:
Q  386 ttaaaacttgatcagaatctgaggtatgtagattttgactcatggtctgaatgcagcggattaaatacagaacac-aagataaagagac--agagaaaga 482  Q
    ||||||| || ||||||||| ||||||||||||| ||||||| |||||||||| ||| || |||||  | ||||| |||||||||||||  ||||| |||    
T  19143665 ttaaaacctggtcagaatcttaggtatgtagattctgactcagggtctgaatgtagcaga-taaatgtaaaacacaaagataaagagacaaagagagaga 19143567  T
Q  483 aagtaaacacaaagcaattttatattggttcctcc 517  Q
    ||| | ||||| ||||||||||||  |||||||||    
T  19143566 aagaagacacagagcaattttatacaggttcctcc 19143532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 386 - 517
Target Start/End: Complemental strand, 20743064 - 20742931
Alignment:
Q  386 ttaaaacttgatcagaatctgaggtatgtagattttgactcatggtctgaatgcagcggattaaatacagaacac-aagataaagagac--agagaaaga 482  Q
    ||||||| || ||||||||| ||||||||||||| ||||||| |||||||||| ||| || |||||  | ||||| |||||||||||||  ||||| |||    
T  20743064 ttaaaacctggtcagaatcttaggtatgtagattctgactcagggtctgaatgtagcaga-taaatgtaaaacacaaagataaagagacaaagagagaga 20742966  T
Q  483 aagtaaacacaaagcaattttatattggttcctcc 517  Q
    ||| | ||||| ||||||||||||  |||||||||    
T  20742965 aagaagacacagagcaattttatacaggttcctcc 20742931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 4587680 - 4587750
Alignment:
Q  150 tgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatc 220  Q
    ||||||||| |||||||| ||||||||| |||||||||| |||  ||||||||||||| ||||||||||||    
T  4587680 tgtttaccggtgtttttggtaaacaatatgactagtttttaaacgttgcttgcaagattaaactagaaatc 4587750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 21821901 - 21821848
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcgg 63  Q
    |||||||||||||||||| | |||||||||| ||||||||| ||| ||||||||    
T  21821901 tctgataccatcttagaaatcgtggttgggcctaacacaatcccacaaaatcgg 21821848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 21861389 - 21861326
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt 73  Q
    |||||||||||||||||| | |||||||||| ||||||||| ||| |||| |||| ||| ||||    
T  21861389 tctgataccatcttagaaatggtggttgggcctaacacaatcccacaaaaccggcttgtaaggt 21861326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 25620231 - 25620168
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt 73  Q
    |||||||||||||||||| | |||||||||| ||||||||  ||| |||| |||| ||||||||    
T  25620231 tctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggt 25620168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 44874567 - 44874621
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggc 64  Q
    |||||||||||||||||  |||||||| ||| ||||||||  |||||||||||||    
T  44874567 tctgataccatcttagacattgtggtttggcctaacacaagcccataaaatcggc 44874621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 240563 - 240522
Alignment:
Q  150 tgtttaccgatgtttttgataaacaataagactagttttaaa 191  Q
    ||||||||| | |||||| |||||||||||||||||||||||    
T  240563 tgtttaccggtatttttggtaaacaataagactagttttaaa 240522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 17132470 - 17132530
Alignment:
Q  160 tgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatc 220  Q
    |||||||| ||||||||||||||||||||||||| ||||||| | |||||||||| |||||    
T  17132470 tgtttttggtaaacaataagactagttttaaaatgttgcttgtaggatcaaactataaatc 17132530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 16239686 - 16239623
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt 73  Q
    |||||||||||||||||| | |||||||||| ||||||||| ||| |||| |||| ||||||||    
T  16239686 tctgataccatcttagaaatcgtggttgggcctaacacaatcccacaaaaccggcttgtgaggt 16239623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 9273058 - 9272993
Alignment:
Q  8 gttctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt 73  Q
    ||||||||||||| |||||| | |||||||||||||||||||  ||| |||| |||| ||||||||    
T  9273058 gttctgataccatattagaaatggtggttgggcttaacacaaccccacaaaaccggcttgtgaggt 9272993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 1723065 - 1723128
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt 73  Q
    |||||||||||||||||| | |||||||||| ||||||||  ||| |||| |||| ||||||||    
T  1723065 tctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggt 1723128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 22729195 - 22729156
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaa 49  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  22729195 tctgataccatcttagaaattgtggttgggcctaacacaa 22729156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 54368611 - 54368548
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt 73  Q
    |||||||||||||||||| | |||||||||  ||||||||  |||||||| |||| ||||||||    
T  54368611 tctgataccatcttagaaatcgtggttgggtctaacacaaccccataaaaccggcttgtgaggt 54368548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 54567987 - 54567924
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt 73  Q
    |||||||||||||||||| | |||||||||| ||||||||  ||| |||| |||| ||||||||    
T  54567987 tctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggt 54567924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 13825007 - 13824970
Alignment:
Q  12 tgataccatcttagaatttgtggttgggcttaacacaa 49  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  13825007 tgatatcatcttagaatttgtggttggtcttaacacaa 13824970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 16926938 - 16926999
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgag 71  Q
    |||||||||||||||||| | ||||||| |||||||||||  ||| |||| |||| ||||||    
T  16926938 tctgataccatcttagaaatcgtggttgagcttaacacaaccccacaaaaccggcttgtgag 16926999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 517
Target Start/End: Complemental strand, 21528777 - 21528732
Alignment:
Q  472 acagagaaagaaagtaaacacaaagcaattttatattggttcctcc 517  Q
    ||||||| |||||| | |||||||||||||||||| ||||||||||    
T  21528777 acagagagagaaagcagacacaaagcaattttatactggttcctcc 21528732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 361 - 517
Target Start/End: Original strand, 8684845 - 8685004
Alignment:
Q  361 gctttttgtagtttctttttc--tgtgttaaaacttgatcagaatctgaggtatgtagattttgactcatggtctgaatgcagcggattaaatacagaac 458  Q
    |||||||| || |||||||||  |||||||||||||| ||| ||||||||||||| | |||||||| ||| |||||| || |||  |||||  |||||||    
T  8684845 gctttttgcagcttctttttccgtgtgttaaaacttggtcataatctgaggtatgcaaattttgacacatagtctgattgtagcaaattaagaacagaac 8684944  T
Q  459 a-caagataaagagacagagaaagaaagtaaacacaaagcaattttatattggttcctcc 517  Q
    |  |||||||||| | ||  |||||||| | | | || ||||||||||| ||||||||||    
T  8684945 ataaagataaagataaaggaaaagaaagcagatataatgcaattttatagtggttcctcc 8685004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 35406173 - 35406103
Alignment:
Q  150 tgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatc 220  Q
    ||||||||| | |||||| ||||||||||||||||||||||||  ||||||||| ||||| | ||||||||    
T  35406173 tgtttaccggtttttttggtaaacaataagactagttttaaaacgttgcttgcaggatcagaatagaaatc 35406103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 21625154 - 21625213
Alignment:
Q  160 tgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaat 219  Q
    |||||||  ||||||||||||||||||||||||| || |||| | |||||||||||||||    
T  21625154 tgtttttagtaaacaataagactagttttaaaatgttacttgtatgatcaaactagaaat 21625213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 31483251 - 31483310
Alignment:
Q  162 tttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatcc 221  Q
    |||||| ||||||| |||||||||||| |||  ||||||||| |||||||||||||||||    
T  31483251 tttttggtaaacaagaagactagtttttaaaagttgcttgcatgatcaaactagaaatcc 31483310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 13210621 - 13210584
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacac 47  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  13210621 tctgataccatcttagaatttgtggttgggcctaacac 13210584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 31475539 - 31475600
Alignment:
Q  160 tgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatcc 221  Q
    |||||||| ||||||| |||||||||||| |||  ||||||||| ||||||| |||||||||    
T  31475539 tgtttttggtaaacaagaagactagtttttaaaagttgcttgcatgatcaaagtagaaatcc 31475600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 482
Target Start/End: Complemental strand, 16153186 - 16153064
Alignment:
Q  363 tttttgtagtttctttttctgtg--ttaaaacttgatcagaatctgaggtatgtagattttgactcatggtctgaatgcagcggattaaatacagaacac 460  Q
    ||||||||| |||||||||||||  | ||| |||| ||| ||| ||||||||||||| |  ||| ||   |||||||||||||||| || ||||||||||    
T  16153186 tttttgtagattctttttctgtgagtcaaagcttggtcataatttgaggtatgtagaatccgacacaacatctgaatgcagcggataaagtacagaacac 16153087  T
Q  461 a-agataaagagacagagaaaga 482  Q
    | | ||||||||| || ||||||    
T  16153086 acaaataaagagatagggaaaga 16153064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 25473213 - 25473283
Alignment:
Q  150 tgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatcc 221  Q
    |||| |||| |||||||| ||||||| |  |||||||||||||| || |||||| |||||||||||||||||    
T  25473213 tgttaaccggtgtttttggtaaacaagac-actagttttaaaatgttacttgcatgatcaaactagaaatcc 25473283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 28407782 - 28407845
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt 73  Q
    |||||||||||||||||| | |||||||||| ||||||||  ||| |||| |||| ||||||||    
T  28407782 tctgataccatcttagaaatcgtggttgggcctaacacaactccacaaaaccggcttgtgaggt 28407845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 40149225 - 40149264
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaa 49  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  40149225 tctgataccatcttagaaattgtggttgggcctaacacaa 40149264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 40379433 - 40379496
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt 73  Q
    |||||||||||||||||| | |||||||||| ||||||||  ||| |||| |||| ||||||||    
T  40379433 tctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggt 40379496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 20515886 - 20515848
Alignment:
Q  150 tgtttaccgatgtttttgataaacaataagactagtttt 188  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  20515886 tgtttaccggtgtttttggtaaacaataagactagtttt 20515848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 93614 - 93655
Alignment:
Q  8 gttctgataccatcttagaatttgtggttgggcttaacacaa 49  Q
    |||||||||||||||||||| | |||||||||| ||||||||    
T  93614 gttctgataccatcttagaaatcgtggttgggcctaacacaa 93655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 517
Target Start/End: Original strand, 9823558 - 9823678
Alignment:
Q  397 tcagaatctgaggtatgtagattttgactcatggtctgaatgcagcggattaaatacagaacacaa-gataaagagacagagaaagaaagtaaacacaaa 495  Q
    ||||||||||||||||| | ||| |||||||  |||||||||||  || |||| || |||||| || |||||||||||||||| |||||| | ||| |||    
T  9823558 tcagaatctgaggtatgcatattctgactcagagtctgaatgcaatgg-ttaagtatagaacataaagataaagagacagagagagaaagcagacataaa 9823656  T
Q  496 gcaattttatattggttcctcc 517  Q
     |||||||||| || |||||||    
T  9823657 acaattttatactgattcctcc 9823678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 18333688 - 18333751
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt 73  Q
    |||||||||||||||||||| |||||||||| ||||||||  ||| |||| |||| ||||||||    
T  18333688 tctgataccatcttagaattcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggt 18333751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 24531694 - 24531631
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt 73  Q
    |||||||||||||||||| | |||||||||| ||||||||  ||| ||||||||| ||||||||    
T  24531694 tctgataccatcttagaaatcgtggttgggcataacacaaccccacaaaatcggcttgtgaggt 24531631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 30985885 - 30985816
Alignment:
Q  150 tgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatc 220  Q
    ||||||||  ||||||||||||| ||||| |||| ||||||||| |||||||| |||||||||||| ||||    
T  30985885 tgtttacctgtgtttttgataaataataatactaattttaaaatgttgcttgc-agatcaaactaggaatc 30985816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 9033531 - 9033586
Alignment:
Q  160 tgtttttgataaacaataag--actagttttaaaatattgcttgcaagatcaaact 213  Q
    |||||||| ||||||||||   |||||||||||||| |||||||||||||||||||    
T  9033531 tgtttttggtaaacaataatgtactagttttaaaatgttgcttgcaagatcaaact 9033586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 8098412 - 8098349
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt 73  Q
    ||||||||||| |||||| | |||||||||||||||||||  ||| |||| |||| ||||||||    
T  8098412 tctgataccatattagaaatcgtggttgggcttaacacaaccccacaaaaccggcttgtgaggt 8098349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 41666982 - 41667045
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt 73  Q
    |||||||||||||||||| | |||||||||| ||||||||  ||| |||| |||| ||||||||    
T  41666982 tctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggt 41667045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 517
Target Start/End: Complemental strand, 19570483 - 19570344
Alignment:
Q  383 gtgttaaaacttgatcagaatctgaggtatgtagattttgactcatggtctgaatgcagcggattaaatacagaacac-aagataaagagacagagaaag 481  Q
    |||||||  |||||||||||||| ||||||  ||||| |||  ||  || |||||||| | ||||||||||| ||||| ||| |||||||||||||| ||    
T  19570483 gtgttaagtcttgatcagaatctaaggtataaagattctgatacagagtatgaatgcaacagattaaatacaaaacactaagttaaagagacagagatag 19570384  T
Q  482 aaagtaaac----acaaagcaattttatattggttcctcc 517  Q
    | || || |    |||||| ||||||||||| ||||||||    
T  19570383 agagaaagcaggaacaaaggaattttatatttgttcctcc 19570344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 478
Target Start/End: Original strand, 12046493 - 12046616
Alignment:
Q  361 gctttttgtagtttctttttctg--tgtt--aaaacttgatcagaatctgaggtatgtagattttgactcatggtctgaatgcagcggatt-aaatacag 455  Q
    ||||||| |||||| ||||||||  ||||  ||||| || ||| || |||| ||||| ||||| |||||||  |||||||||||| | ||| |||||||     
T  12046493 gctttttatagtttatttttctgagtgtttaaaaacctggtcataacctgacgtatgcagattctgactcagagtctgaatgcagtgtattaaaatacat 12046592  T
Q  456 aacac-aagataaagagacagaga 478  Q
    ||||| ||||||||||||||||||    
T  12046593 aacacaaagataaagagacagaga 12046616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 16809342 - 16809411
Alignment:
Q  150 tgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaat 219  Q
    ||||||||  ||| |||| |||| || ||||||||||||||||| ||  ||||| |||||||||||||||    
T  16809342 tgtttacccgtgtgtttggtaaataagaagactagttttaaaatgttatttgcaggatcaaactagaaat 16809411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 18333464 - 18333517
Alignment:
Q  20 tcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt 73  Q
    ||||||||||||||||||||| ||||||||  ||| |||| |||| ||||||||    
T  18333464 tcttagaatttgtggttgggcctaacacaaccccacaaaaccggcttgtgaggt 18333517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 4521939 - 4521868
Alignment:
Q  149 ctgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatc 220  Q
    ||||||| || || ||||| |||||||||||| |||||||||||| || |||| || |||||||||||||||    
T  4521939 ctgtttatcggtgattttggtaaacaataagattagttttaaaatgttacttggaaaatcaaactagaaatc 4521868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 24115553 - 24115483
Alignment:
Q  149 ctgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaat 219  Q
    ||||||| || |||||||| |||||||||| |||||||||||||| ||||||| | ||| | |||||||||    
T  24115553 ctgtttatcggtgtttttggtaaacaataaaactagttttaaaatgttgcttgtaggataatactagaaat 24115483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 51589901 - 51589838
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt 73  Q
    ||||||||||| |||||| | |||||||||| ||||||||  ||| ||||||||| ||||||||    
T  51589901 tctgataccatattagaaatcgtggttgggcctaacacaaccccacaaaatcggcttgtgaggt 51589838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 24634090 - 24634052
Alignment:
Q  150 tgtttaccgatgtttttgataaacaataagactagtttt 188  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  24634090 tgtttaccgatgtttttcgtaaacaataagactagtttt 24634052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 44787681 - 44787643
Alignment:
Q  150 tgtttaccgatgtttttgataaacaataagactagtttt 188  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  44787681 tgtttaccggtgtttttgataaacaacaagactagtttt 44787643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 4112539 - 4112592
Alignment:
Q  20 tcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt 73  Q
    |||||||| | ||||||| || ||||||||| ||||||||||||| ||||||||    
T  4112539 tcttagaaatcgtggttgtgcctaacacaatcccataaaatcggcttgtgaggt 4112592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 11324636 - 11324673
Alignment:
Q  150 tgtttaccgatgtttttgataaacaataagactagttt 187  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  11324636 tgtttaccgatgtgtttggtaaacaataagactagttt 11324673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 11482657 - 11482694
Alignment:
Q  150 tgtttaccgatgtttttgataaacaataagactagttt 187  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  11482657 tgtttaccgatgtgtttggtaaacaataagactagttt 11482694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 31181512 - 31181565
Alignment:
Q  20 tcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt 73  Q
    ||||||||||||||||||||| ||||||||  |||||||| | || ||||||||    
T  31181512 tcttagaatttgtggttgggcctaacacaaccccataaaaccagcttgtgaggt 31181565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 38668220 - 38668159
Alignment:
Q  10 tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgag 71  Q
    |||||||||||||||||| ||||| |||||| ||||||||  ||| ||||| ||| ||||||    
T  38668220 tctgataccatcttagaaattgtgattgggcctaacacaaccccacaaaattggcttgtgag 38668159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 4112998 - 4113058
Alignment:
Q  13 gataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt 73  Q
    ||||||||||||||| | |||||||||| ||||||||  ||| |||| |||| ||||||||    
T  4112998 gataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggt 4113058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 517
Target Start/End: Original strand, 980 - 1067
Alignment:
Q  433 tgaatgcagcggattaaatacagaacaca-agataaagagacagagaaagaaa--gtaaacacaaagcaattttatattggttcctcc 517  Q
    |||||| ||||||||| ||| |||||||| | ||||||||| | ||||||| |  | ||||||||| |||||||||||||||||||||    
T  980 tgaatgtagcggattagatatagaacacacatataaagagataaagaaagagaaggcaaacacaaaacaattttatattggttcctcc 1067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0346 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0346
Description:

Target: scaffold0346; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 12459 - 12408
Alignment:
Q  160 tgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaa 211  Q
    |||||||||||||||||||||||| ||||||| |||| |||| | |||||||    
T  12459 tgtttttgataaacaataagactaattttaaattattacttgtaggatcaaa 12408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 382026 - 382094
Alignment:
Q  363 tttttgtagtttctttttctg--tgtt--aaaacttgatcagaatctgaggtatgtagattttgactca 427  Q
    |||||| ||||||||||||||  ||||  |||||||| ||||||||||||||||| ||||| |||||||    
T  382026 tttttgcagtttctttttctgagtgtttaaaaacttggtcagaatctgaggtatgcagattgtgactca 382094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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