View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5219-Insertion-7 (Length: 481)
Name: NF5219-Insertion-7
Description: NF5219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5219-Insertion-7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 7 - 481
Target Start/End: Complemental strand, 41405044 - 41404570
Alignment:
| Q |
7 |
aacccgaaaattcaagaatgtctttgacgtatttgaaattggaatcgttttccggatatgacttgaagtgaaggaaatgattttcaagactgttgtttgt |
106 |
Q |
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| T |
41405044 |
aacccgaaaattcaagaatgtctttgacatatttgaaattggaatcgttttccggatatgacttgaagtgaaggaaatgattttcaagactgttgtttgt |
41404945 |
T |
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| Q |
107 |
gtctatgtctgtcacacttgcatttgaactgcgcgtattcgattcctttcctggtatatatatagccaaaataatgattagtaatgatctctgaaaccgt |
206 |
Q |
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| T |
41404944 |
gtctatgtctgtcacacttgcatttgaactgcgcgcattcgattcctttcctggtatatatatagccaaaataatgattagtaatgatctctgataccgt |
41404845 |
T |
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| Q |
207 |
caatcaatcgcaaatcatcttatgagtaaagtagttatgattgaagtcaaatatttttaaaacaattatgattgatttatagcgaatatcaattaaattc |
306 |
Q |
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| T |
41404844 |
caatcaatcgcaaatcatcttatgagtaaagtagttatgattaaagtcaaatatttttaaaacaattatgattgatttatagcgaatatcaattaaattc |
41404745 |
T |
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| Q |
307 |
ctcaaagaaatgttatgttggtctcatgcacattgacataaatttgttaccttctgcttggttgattgtattgtcttgacagctaatttcaagtgatgtt |
406 |
Q |
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| T |
41404744 |
ctcaaagaaattttatgttggtctcatgcacattgacataaatttgttaccttctgcttggctgattatattgtcttgacagctaatttcaagtgatgtt |
41404645 |
T |
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| Q |
407 |
gttgcctccttgctaagataagtggtcatgcttgtttccaccgctggattatccgataaagaactaggattcaca |
481 |
Q |
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| T |
41404644 |
gttgcctccttgctaagataagcggtcatgcttgttttcaccgctggattatccgataaagaactaggattcaca |
41404570 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 266
Target Start/End: Original strand, 10345717 - 10345745
Alignment:
| Q |
238 |
tagttatgattgaagtcaaatatttttaa |
266 |
Q |
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| T |
10345717 |
tagttatgattgaagtcaaatatttttaa |
10345745 |
T |
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