View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5219-Insertion-8 (Length: 475)
Name: NF5219-Insertion-8
Description: NF5219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5219-Insertion-8 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 8 - 475
Target Start/End: Original strand, 3602682 - 3603147
Alignment:
| Q |
8 |
caatttactccctatcccataataattgggtctcaatggctttgttatataattagtaaaaaatccttcaatctcacaaaaagtactttgtcagaatttt |
107 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3602682 |
caatttactccctgcctcataataattgggtctcaatggctttgttatataattagtagaaaatccttcaatctcacaaaaagtactttgtcagaatttt |
3602781 |
T |
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| Q |
108 |
atttcaaaaagcaggtaaccgtaacatgagaaaataatacaatacataactcaagaatataaatctataatagtgttagcattaattacttacccacaat |
207 |
Q |
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| T |
3602782 |
atttcaaaaagcaggtaaccgtaa--tgagaaaataatacaatacataactcaagaatataaaactatattaatgttagcattaggaacctacccacaat |
3602879 |
T |
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| Q |
208 |
ataataaaaatatggcttgtaatcatggaatttcatatttttgaaaatcacaacaaatacaaagccaaggagcttccgcacaaacagcaccatttttaca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3602880 |
ataataaaaatatggcttgtaatcatggaatttcatgtttttgaaaatcacaacaaatacaaagccaaggagcttccgcacaaacaacaccatttttaca |
3602979 |
T |
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| Q |
308 |
tatttcagcataatatatactgcaactttcattgtaataatcctcagtatcgtcgatagtaattgccataacaaggagaactaatacaaggacagcaatg |
407 |
Q |
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| T |
3602980 |
tatttcagcataatatatactgcaactttcattgtaataatcctcagtaccgtcgatagtaattgccataacaaggagaactaatacaaggacagcaatg |
3603079 |
T |
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| Q |
408 |
gtaaatttttcaatctcacaagagtaccaaattccttccaaacatcatcacaattgagcttaactcaa |
475 |
Q |
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| T |
3603080 |
gtaaatttttcaatctcacaagagtaccaaattccttccaaacatcatcacaattgagcttaactcaa |
3603147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 8 - 418
Target Start/End: Original strand, 14341484 - 14341890
Alignment:
| Q |
8 |
caatttactccctatcccataataattgggtctcaatggctttgttatataattagtaaaaaatccttcaatctcacaaaaagtactttgtcagaatttt |
107 |
Q |
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||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14341484 |
caatttattccctgcctcataataattgggtctcaatggctttgttatataattagtagaaaatccttcaatctcacaaaaagtactttgtcagaatttt |
14341583 |
T |
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| Q |
108 |
atttcaaaaagcaggtaaccgtaacatgagaaaataatacaatacataactcaagaatataaatctataatagtgttagcattaattacttacccacaat |
207 |
Q |
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| T |
14341584 |
atttcaaaaaacaggtaaccgtaacatgagaaaataatacaatacataactcatgaatataaatctataataatgttagcatta----cttacccacaat |
14341679 |
T |
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| Q |
208 |
ataataaaaatatggcttgtaatcatggaatttcatatttttgaaaatcacaacaaatacaaagccaaggagcttccgcacaaacagcaccatttttaca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| |
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| T |
14341680 |
ataataaaaatatggcttgtaatcatggaatttcatgtttttgaaaatcacaacaaatacaaagccaaggagcttccaaacaaatagcacgatttttaca |
14341779 |
T |
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| Q |
308 |
tatttcagcataatatatactgcaactttcattgtaataatcctcagtatcgtcgatagtaattgccataacaaggagaactaatacaaggacagcaatg |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14341780 |
tatttcagcataatatatactgcaactttcattgtaataatcctcagtaccgtcgatagtaattgccataacaaggagaactaatacaagggaagcaatg |
14341879 |
T |
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| Q |
408 |
gtaaatttttc |
418 |
Q |
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| T |
14341880 |
gtaaatttttc |
14341890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 33372979 - 33372934
Alignment:
| Q |
426 |
caagagtaccaaattccttccaaacatcatcacaattgagcttaac |
471 |
Q |
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| T |
33372979 |
caagagtaccagatcccttccaaacaccatcacaattaagcttaac |
33372934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 11996061 - 11996106
Alignment:
| Q |
426 |
caagagtaccaaattccttccaaacatcatcacaattgagcttaac |
471 |
Q |
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| T |
11996061 |
caagagtaccaaatcccttccaagcaccatcacaattaagcttaac |
11996106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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