View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5219-Insertion-9 (Length: 315)
Name: NF5219-Insertion-9
Description: NF5219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5219-Insertion-9 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 7 - 311
Target Start/End: Original strand, 5778227 - 5778531
Alignment:
| Q |
7 |
atcaacaatgttgcagggagtaagaccaacattgctataggtgccatgtaaagcaacaggttcatagaattcaacttttctctgaaaagcatcaaaatta |
106 |
Q |
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| T |
5778227 |
atcaacaatgttgcagggagtaagaccaacattgctataggtgccatgtaaagcaacaggttcatagaattcaacttttctctgaaaagtatcaaaatta |
5778326 |
T |
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| Q |
107 |
tttgaagtaagtttaaagggaagtagataattgcacaaccaatttgcacttgtagaatgtttcaccgacacttctgattaaaggtatggtcggtgttcaa |
206 |
Q |
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| T |
5778327 |
tttgaagtaagtttaaagggaagtagataattgcacaaccaatttgcacttgtagaatgtttcaccgacacttctgattaaaggtatggtcggtgttcaa |
5778426 |
T |
|
| Q |
207 |
cacagacaaggacacacagcagcacatgtgattacattcaattgatttattgtctcaaattaccactagttttgatgtataagtgtcattgtcagtgacg |
306 |
Q |
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| T |
5778427 |
cacagacaaggacacacagcagcacatgtgattacattcaattgatttattgtctcaaattaccactagtttcgatgtataagtgtcattgtcagtgacg |
5778526 |
T |
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| Q |
307 |
tgtct |
311 |
Q |
| |
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||||| |
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| T |
5778527 |
tgtct |
5778531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 28322291 - 28322244
Alignment:
| Q |
229 |
cacatgtgattacattcaattgatttattgtctcaaattaccactagt |
276 |
Q |
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| T |
28322291 |
cacatgtgattacattcaattaattcattttctcaaattatcactagt |
28322244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 5461181 - 5461217
Alignment:
| Q |
232 |
atgtgattacattcaattgatttattgtctcaaatta |
268 |
Q |
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| T |
5461181 |
atgtgattacattcaattaatttattatctcaaatta |
5461217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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