View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5219_high_10 (Length: 245)
Name: NF5219_high_10
Description: NF5219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5219_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 36154257 - 36154483
Alignment:
| Q |
1 |
cctcaccacccttaccatcaacaacagcatcaccaccattaccagcaacaacagcaacagcaccatcaccaggattaagtacagttccgcttgttccaac |
100 |
Q |
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| T |
36154257 |
cctcaccacccttaccatcaacaacagcatcaccaccattaccagcaacaacagcaacagcaccatcaccaggattaagtacagttccgcttgttccaac |
36154356 |
T |
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| Q |
101 |
aacaccaactggagcaccatcacccaccataacaatcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggttctccgttcta |
200 |
Q |
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| T |
36154357 |
aacaccaactggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggttctccgttcta |
36154456 |
T |
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| Q |
201 |
atccgtcttctcaaaacaacacaatta |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
36154457 |
atccgtcttctcaaaacaacacaatta |
36154483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 36150873 - 36151097
Alignment:
| Q |
3 |
tcaccacccttaccatcaacaacagcatcaccaccattaccagcaacaacagcaacagcaccatcaccaggattaagtacagttccgcttgttccaacaa |
102 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |
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| T |
36150873 |
tcaccacccttaccatcaacaacagcatcaacaccattaccagcaacaacagcaacagcgccatcaccaggattaagcacagttccacttgttccaacaa |
36150972 |
T |
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| Q |
103 |
caccaactggagcaccatcacccaccataacaatcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggttctccgttctaat |
202 |
Q |
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||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36150973 |
caccagctggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggttctccgttctaat |
36151072 |
T |
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| Q |
203 |
ccgtcttctcaaaacaacacaatta |
227 |
Q |
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||||||||||||||||||||||||| |
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| T |
36151073 |
ccgtcttctcaaaacaacacaatta |
36151097 |
T |
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