View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5219_high_2 (Length: 714)
Name: NF5219_high_2
Description: NF5219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5219_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 558; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 54 - 694
Target Start/End: Original strand, 1063871 - 1064508
Alignment:
| Q |
54 |
acattattaaacaagtgtatataaggggtgttcaaatattaatgttgttagtaattcatgggtgttcaattaatactatacttcaagaggaatcacattc |
153 |
Q |
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| T |
1063871 |
acattattaaacaagtgtatataaggggtgttcaaatatcaatgttgttagtaattcatgggtgttcaa---atactatacttcaagaggaatcacattc |
1063967 |
T |
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| Q |
154 |
atgagggtctgcccagagacttgtccatgtgagttttgtttatttgcaatgttttagaaattgagtcaaacatcaaactaataaggcatttggatcatgt |
253 |
Q |
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| T |
1063968 |
atgagggtctgcccagagacttgtccacgtgagttttgtttctttgcaatgttttagaaattgagtcaaacatcaaactaacaaggcatttggatcatgt |
1064067 |
T |
|
| Q |
254 |
tcaacgactttaatccatataaaatgagacaaaattgtagtcaaaattgttttaataaacaaattgcagatcatgctagttcaagattaaactaattgaa |
353 |
Q |
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| T |
1064068 |
tcaacgactttaatccatataaaatgagacaaaattgtagtcaaaattgttttaataaacaaattgcagatcatgctagttcaagattaaactaattgaa |
1064167 |
T |
|
| Q |
354 |
ctgtggnnnnnnnaaaatattggtgtctttctaaatagatttggattgcatgcagtcatgcagataagagtggtttgttcgacaattatgatcggacaat |
453 |
Q |
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| T |
1064168 |
ctgtggttttttaaaaatattggtgtctttctaaatagatttggattgcatgcagtcatgcagataagaatggtttgttcgacaattatgatcggacaat |
1064267 |
T |
|
| Q |
454 |
cgagatttaaaacaatttaaatattaagaataaaccaattttaaatttggacagtttaatttaaatcggacggtcaaatctcttctgcatgatgttttga |
553 |
Q |
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| T |
1064268 |
cgagatttaaagcagtttaaatattaagaataaaccaattttaaatttggacagtttaatttaaatcggacggtcaaatctcttctgcatgatgttttga |
1064367 |
T |
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| Q |
554 |
ctatatgcaattcagatatacattattttttagcacaataacttcaatattcaaccaattatgcaacgatattattcaaacacataaattaagtattgca |
653 |
Q |
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| T |
1064368 |
ttatatgcaattcagatatatattattttttaacacaataacttcaatattgaaccaattatgcaacgatattaatcaaacacataaattaagtattgca |
1064467 |
T |
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| Q |
654 |
aaagcaagcataaattaataattgattggacgatttcgaac |
694 |
Q |
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| T |
1064468 |
aaagcaagcataaattaataattgattggacgatttcgaac |
1064508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 469 - 694
Target Start/End: Original strand, 1088023 - 1088242
Alignment:
| Q |
469 |
tttaaatattaagaataaaccaattttaaatttggacagtttaatttaaatcggacggtcaaatctcttctgcatgatgttttgactatatgc--aattc |
566 |
Q |
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| T |
1088023 |
tttaaataataagaataaagctactttaaatttggacagtctccattagatcagatggtcaaatctctcctgcatgaagttttaactatatgcgcaattc |
1088122 |
T |
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| Q |
567 |
agatatacattattttttagcacaataacttcaatattcaaccaattatgcaacgatattattcaaacacataaattaagtattgcaaaagcaagcataa |
666 |
Q |
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| T |
1088123 |
agat--------tattttaacgcagtaactttaatattcaaccatttatgtaacaatattaatcaaacacataaattaagtattgcaaaagctacactaa |
1088214 |
T |
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| Q |
667 |
attaataattgattggacgatttcgaac |
694 |
Q |
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| T |
1088215 |
attaatagttgattggacgatttcgaac |
1088242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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