View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5219_high_6 (Length: 368)
Name: NF5219_high_6
Description: NF5219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5219_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 8425878 - 8425529
Alignment:
| Q |
1 |
taggcaacaattaggcaatttgattctggttgatatggtatgttctctctttacaatgagaacatattcctctaaattgctaagcttccaaattgtttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8425878 |
taggcaacaattaggcaatttgattctggttgatatggtatgttatctctttacaatgagaacatattcctctaaattgctaagcttccaaattgtttgt |
8425779 |
T |
|
| Q |
101 |
tccattgctcgtaagtgccaagttcattaggtgaaacagaaggcctcacctgttgcaaggaaatcttgaagtcctacacaaattgaagaaaacctttaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8425778 |
tccattgctcgtaagtgccaagttcattaggtgaaacagaaggcctcacctgttgcaaggaaatcttgaagtcctacacaaattgaagaaaacctttaaa |
8425679 |
T |
|
| Q |
201 |
aattaataatgaacctgacaaatatttttgaaatttttatgttctgtgcacccttttccatacctgaagagttactggtctaatcttttccttttccaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8425678 |
aattaataatgaacctgacaaatatttttgaaatttttatgttctgtgcacccttttccatacctgaagagttactggtctaatcttttccttttccaag |
8425579 |
T |
|
| Q |
301 |
ttcacaacttttgcaccttgtcttatttgctctcttatgggacccagaga |
350 |
Q |
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| T |
8425578 |
ttcacaacttttgcaccttgtcttatttgctctcttatgggacccagaga |
8425529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 77 - 344
Target Start/End: Original strand, 8389743 - 8390011
Alignment:
| Q |
77 |
ttgctaagcttccaaattgtttgttccattgctcgtaagtgccaagttcattaggtgaaacagaaggcctcacctgttgcaaggaaatcttgaagtccta |
176 |
Q |
| |
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|||||||| |||||||||| |||||||||||||| || ||||||| |||||||||||||||||||||||||| | ||||| |||| |||||||||||| |
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| T |
8389743 |
ttgctaaggttccaaattgcttgttccattgctcaaaaatgccaagatcattaggtgaaacagaaggcctcacttcttgcagggaattcttgaagtcctg |
8389842 |
T |
|
| Q |
177 |
cacaaattgaagaaaacctttaaaaattaataatgaa-cctgacaaatatttttgaaatttttatgttctg--tgcacccttttccatacctgaagagtt |
273 |
Q |
| |
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|||||| |||| ||| | |||||||||||||||| || | || ||||||||||||||||| ||||||||| || |||||||| |||||||| |||| |
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| T |
8389843 |
cacaaagtgaataaatcatttaaaaattaataatcaatcttggaaaatatttttgaaatttctatgttctgtatggacccttttgcatacctggagag-- |
8389940 |
T |
|
| Q |
274 |
actggtctaatcttttccttttccaagttcacaacttttgcaccttgtcttatttgctctcttatgggacc |
344 |
Q |
| |
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||| |||||||||| |||||||||||||| |||| ||||||||| ||||||||| ||||||||||||||| |
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| T |
8389941 |
actagtctaatcttctccttttccaagtttacaatttttgcaccatgtcttattgcctctcttatgggacc |
8390011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 68 - 278
Target Start/End: Original strand, 8396675 - 8396887
Alignment:
| Q |
68 |
tcctctaaattgctaagcttccaaattgtttgttccattgctcgtaagtgccaagttcattaggtgaaacagaaggcctcacctgttgcaaggaaatctt |
167 |
Q |
| |
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||||||||| |||| | |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| | || ||||| |||| |||| |
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| T |
8396675 |
tcctctaaacagctagggttccaaattgcttgttccattgctcaaaagtgccaagttcattaggtgaaacagaaggccttatctcttgcagggaattctt |
8396774 |
T |
|
| Q |
168 |
gaagtcctacacaaattgaagaaaacctttaaaaattaataatgaacctgacaaatatttttgaaatttttatgttctg--tgcacccttttccatacct |
265 |
Q |
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| T |
8396775 |
gaagtcctacacaaagtgaagaaatcattttaaaattaatattcaccttgagaaatattttttaaatttctaggttttgcatgcactcttttgcatacct |
8396874 |
T |
|
| Q |
266 |
gaagagttactgg |
278 |
Q |
| |
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||||||||||||| |
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| T |
8396875 |
gaagagttactgg |
8396887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 90 - 278
Target Start/End: Complemental strand, 8410406 - 8410216
Alignment:
| Q |
90 |
aaattgtttgttccattgctcgtaagtgccaagttcattaggtgaaacagaaggcctcacctgttgcaaggaaatcttgaagtcctacacaaattgaaga |
189 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||| | || ||||| |||| || |||||||||||||||| |||||| |
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| T |
8410406 |
aaattgcttgttccattgctcaaaagtgccaagttcattaggtgaaacagaaggccttatctcttgcatggaattcatgaagtcctacacaaagtgaaga |
8410307 |
T |
|
| Q |
190 |
aaacctttaaaaattaataatgaacctgacaaatatttttgaaatttttatgttctg--tgcacccttttccatacctgaagagttactgg |
278 |
Q |
| |
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|| | ||| |||||||||||| | ||| ||||||||||||||||| || ||| || ||||| ||||| |||||||||||||||||||| |
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| T |
8410306 |
aatcttttcaaaattaataatctatttgagaaatatttttgaaatttctaggttttgcatgcactcttttgcatacctgaagagttactgg |
8410216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 8429236 - 8429103
Alignment:
| Q |
77 |
ttgctaagcttccaaattgtttgttccattgctcgtaagtgccaagttcattaggtgaaacagaaggcctcacctgttgcaaggaaatcttgaagtccta |
176 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||| |||| |||||||||||| |
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| T |
8429236 |
ttgctaagcttccaaattgcttgttccattgctcaaaagtgccaagttcattaggtgaaacagaaggcctcacttcttgcagggaattcttgaagtcctg |
8429137 |
T |
|
| Q |
177 |
cacaaattgaagaaaacctttaaaaattaataat |
210 |
Q |
| |
|
|||||| |||||||| | ||| |||||||||||| |
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| T |
8429136 |
cacaaagtgaagaaatcattttaaaattaataat |
8429103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 46 - 276
Target Start/End: Complemental strand, 8415666 - 8415454
Alignment:
| Q |
46 |
tctctttacaatgagaacatattcctctaaattgctaagcttccaaattgtttgttccattgctcgtaagtgccaagttcattaggtgaaacagaaggcc |
145 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
8415666 |
tctccttataatgagaacatattcctctaaattgctaagcttccaaattgt-------------------tgccaaattcattaggtgaaacagaaggct |
8415586 |
T |
|
| Q |
146 |
tcacctgttgcaaggaaatcttgaagtcctacacaaattgaagaaaacctttaaaaattaataatgaacctgacaaatatttttgaaatttttatgttct |
245 |
Q |
| |
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|||| | ||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||| | || | |||| |||||||||||| ||| |
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| T |
8415585 |
tcacttcttgcagggaattcttgaagtccttcacaaattgaagaaaacctttaaaaattaataatcaaccttagaatttttttcgaaatttttatg-tct |
8415487 |
T |
|
| Q |
246 |
g--tgcacccttttccatacctgaagagttact |
276 |
Q |
| |
|
| |||| |||||||||||| |||||||||||| |
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|
| T |
8415486 |
gcatgcatccttttccatacttgaagagttact |
8415454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 67 - 278
Target Start/End: Original strand, 8391785 - 8391998
Alignment:
| Q |
67 |
ttcctctaaattgctaagcttccaaattgtttgttccattgctcgtaagtgccaagttcattaggtgaaacagaaggcctcacctgttgcaaggaaatct |
166 |
Q |
| |
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|||||||||||| ||||||||||||||| |||||||||| ||| ||| | ||||||||||||| ||||||||||| ||| | | || || |||| || |
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| T |
8391785 |
ttcctctaaatttgtaagcttccaaattgcttgttccattcctcataaattccaagttcattagctgaaacagaagaccttatatctttcatggaattca |
8391884 |
T |
|
| Q |
167 |
tgaagtcctacacaaattgaagaaaacctttaaaaattaataatgaacctgacaaatatttttgaaatttttatgttctg--tgcacccttttccatacc |
264 |
Q |
| |
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||||||||||||||| |||||||| | ||| ||||||||| || || ||| ||||||||||||||||| || ||| || ||||| ||||| |||||| |
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|
| T |
8391885 |
agaagtcctacacaaagtgaagaaatcttttcaaaattaattatcaatttgagaaatatttttgaaatttctaggttttgcatgcactcttttgcatacc |
8391984 |
T |
|
| Q |
265 |
tgaagagttactgg |
278 |
Q |
| |
|
|||||||||||||| |
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|
| T |
8391985 |
tgaagagttactgg |
8391998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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