View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5219_high_8 (Length: 325)
Name: NF5219_high_8
Description: NF5219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5219_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 9839237 - 9838930
Alignment:
| Q |
1 |
tggatccattattatacatgttggtattgaccaagactaataaaaaa-tagttgagttttgttgaccaagtttaagaaacannnnnnnnnnnnnnnnnnn |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
9839237 |
tggatccattattatacatgttggtattgaccaagactaataaaaaaatagttgagttttgttgaccaagtttaataaacaatatatatata-------- |
9839146 |
T |
|
| Q |
100 |
aagtccatggaaattgagttagtggatttggaattgaagaaagaaagtaaaaaaggaaggctgccatagcaggaccatattttctcccactttctttgtt |
199 |
Q |
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| T |
9839145 |
aagtccatggaaattgagttagtggatttggaattgaagaaagaaagtaaaaaaggaaggctgccatagcaggaccatattttctcccactttctttgtt |
9839046 |
T |
|
| Q |
200 |
tgtgcaatgattttcactccactttttatcagcactatctcttgctaccaatatttaaatccattagaaacataggaaacaaaacatgcttcttatacat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9839045 |
tgtgcaatgattttcactccactttttatcagcactatctcttgctaccaatatttaaatccattagaaacataggaaacaaaacatgcttcttatacat |
9838946 |
T |
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| Q |
300 |
tcctacctaagtataa |
315 |
Q |
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|||||||||||||||| |
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| T |
9838945 |
tcctacctaagtataa |
9838930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 135
Target Start/End: Complemental strand, 9839273 - 9839238
Alignment:
| Q |
100 |
aagtccatggaaattgagttagtggatttggaattg |
135 |
Q |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
9839273 |
aagttcatggaaattgagttagtggatttggaattg |
9839238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 6852375 - 6852314
Alignment:
| Q |
156 |
aaggctgccatagcaggaccatattttctcccactttctttgtttgtgcaatgattttcact |
217 |
Q |
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| T |
6852375 |
aaggctgccatagcatgaccacaatttctcccactttctttgtttgtgcaatcattttcact |
6852314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 135
Target Start/End: Complemental strand, 6852549 - 6852514
Alignment:
| Q |
100 |
aagtccatggaaattgagttagtggatttggaattg |
135 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6852549 |
aagtccatggaaattgagttagtggatttggaattg |
6852514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 6852513 - 6852458
Alignment:
| Q |
1 |
tggatccattattatacatgttggtattgaccaagactaataaaaaatagttgagttt |
58 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||| |
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| T |
6852513 |
tggatccattattata-atgttgaaattgaccaagactaata-aaaatagttgagttt |
6852458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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