View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5219_low_1 (Length: 992)

Name: NF5219_low_1
Description: NF5219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5219_low_1
NF5219_low_1
[»] scaffold0211 (2 HSPs)
scaffold0211 (831-971)||(24479-24621)
scaffold0211 (831-894)||(24854-24918)
[»] chr7 (6 HSPs)
chr7 (30-139)||(16987125-16987234)
chr7 (39-139)||(13292156-13292256)
chr7 (20-146)||(9867965-9868091)
chr7 (65-142)||(7486529-7486606)
chr7 (49-146)||(12644753-12644850)
chr7 (65-139)||(34854227-34854301)
[»] chr1 (6 HSPs)
chr1 (14-139)||(4601520-4601645)
chr1 (18-139)||(14255063-14255184)
chr1 (47-146)||(16050360-16050459)
chr1 (49-146)||(22414743-22414840)
chr1 (17-145)||(26977676-26977804)
chr1 (35-146)||(12177340-12177451)
[»] chr5 (3 HSPs)
chr5 (14-99)||(25537338-25537423)
chr5 (14-69)||(31202531-31202586)
chr5 (51-157)||(20025253-20025359)
[»] scaffold0291 (1 HSPs)
scaffold0291 (42-146)||(8603-8706)
[»] chr8 (4 HSPs)
chr8 (42-146)||(21416699-21416803)
chr8 (36-148)||(23269201-23269313)
chr8 (115-157)||(13754792-13754834)
chr8 (115-157)||(13765023-13765065)
[»] chr6 (4 HSPs)
chr6 (3-139)||(12449616-12449752)
chr6 (43-119)||(22497351-22497427)
chr6 (14-157)||(19331695-19331838)
chr6 (18-139)||(31295568-31295689)
[»] scaffold0084 (1 HSPs)
scaffold0084 (831-894)||(30900-30963)
[»] chr2 (9 HSPs)
chr2 (49-144)||(36267466-36267561)
chr2 (17-139)||(29137837-29137959)
chr2 (14-75)||(15390682-15390743)
chr2 (90-146)||(18770323-18770379)
chr2 (7-146)||(20120273-20120412)
chr2 (47-146)||(45714961-45715060)
chr2 (42-146)||(3586324-3586428)
chr2 (47-146)||(45258178-45258277)
chr2 (65-146)||(15825138-15825219)
[»] scaffold0380 (1 HSPs)
scaffold0380 (14-139)||(6893-7018)
[»] chr4 (2 HSPs)
chr4 (49-146)||(12683753-12683850)
chr4 (18-139)||(15742186-15742307)
[»] scaffold0505 (1 HSPs)
scaffold0505 (42-146)||(7846-7950)
[»] scaffold0074 (1 HSPs)
scaffold0074 (3-146)||(35175-35318)
[»] chr3 (3 HSPs)
chr3 (52-146)||(17143775-17143869)
chr3 (34-137)||(12108372-12108475)
chr3 (52-146)||(1770796-1770890)
[»] scaffold0263 (1 HSPs)
scaffold0263 (51-143)||(20526-20618)
[»] scaffold0205 (1 HSPs)
scaffold0205 (46-130)||(22851-22935)
[»] scaffold0101 (1 HSPs)
scaffold0101 (50-132)||(10758-10840)


Alignment Details
Target: scaffold0211 (Bit Score: 80; Significance: 5e-37; HSPs: 2)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 831 - 971
Target Start/End: Original strand, 24479 - 24621
Alignment:
Q  831 acagctcggcaggaagagcaaacatcacaacagttgatcagagccatact--accaaatggccaaacactattacatttcatgcctcaggatataaatgg 928  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||    ||||||||||||||||||||   |||||||||||  | ||||||||||    
T  24479 acagcttggcaggaagagcaaacatcacaacagttaattagagccatatatcaccaaatggccaaacactatatgatttcatgcctgggaatataaatgg 24578  T
Q  929 taggtgatctgatagcaggccggtccaacgaatatttgagagg 971  Q
    ||||||||||||||||||||||||||||| |||||| ||||||    
T  24579 taggtgatctgatagcaggccggtccaactaatattcgagagg 24621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 831 - 894
Target Start/End: Original strand, 24854 - 24918
Alignment:
Q  831 acagctcggcaggaagagcaaacatcacaaca-gttgatcagagccatactaccaaatggccaaa 894  Q
    |||||| ||||||||||| ||||||||||| | |||  ||||||||| |||||||||||||||||    
T  24854 acagcttggcaggaagagaaaacatcacaaaaagttagtcagagccacactaccaaatggccaaa 24918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 1e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 16987234 - 16987125
Alignment:
Q  30 acggcttctggcacggcggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatgaaactgagaa 129  Q
    ||||||||||| |||||||| ||||||||||||| ||||| ||||||||  |||| ||| |||||||||||||| || ||  || ||||| || ||||||    
T  16987234 acggcttctggtacggcggcaatgagtcttcgcggtggaacgaaaggtgcatgcgggcacgttagcactctgacactcaagccagtaatggaattgagaa 16987135  T
Q  130 agaatgtgta 139  Q
    ||| ||||||    
T  16987134 agagtgtgta 16987125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 13292256 - 13292156
Alignment:
Q  39 ggcacggcggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatgaaactgagaaagaatgtgt 138  Q
    ||||||||||||||||||||||| | ||||| ||||||||| |||  | | ||||||||||| ||||| || ||| |||||||||||| ||||| |||||    
T  13292256 ggcacggcggcgatgagtcttcgtggtggaaggaaaggtgtctgcaggtacgttagcactctaacgctcaagtcagtaatgaaactgaaaaagagtgtgt 13292157  T
Q  139 a 139  Q
    |    
T  13292156 a 13292156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 9868091 - 9867965
Alignment:
Q  20 tgtgacagttacggcttctggcacggcggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatg 119  Q
    |||||| || ||||||||  | |||||||||| ||||||||||| ||| | ||||||||  |||  | | ||||||||||||||||| || ||| |||||    
T  9868091 tgtgacggtaacggcttccagaacggcggcgacgagtcttcgcggtgggacgaaaggtgcatgcaggaacgttagcactctgacgctcaagtcagtaatg 9867992  T
Q  120 aaactgagaaagaatgtgtagaaagtg 146  Q
     ||||||| |||| | |||||||||||    
T  9867991 gaactgaggaagagtttgtagaaagtg 9867965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 7486529 - 7486606
Alignment:
Q  65 tggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatgaaactgagaaagaatgtgtagaa 142  Q
    ||||||||||||||  |||  ||| ||||||||||  ||||| |||||| ||||| |||||||||||| |||||||||    
T  7486529 tggaatgaaaggtgcatgcaggcacgttagcactccaacgctcaattcagtaatggaactgagaaagattgtgtagaa 7486606  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 12644753 - 12644850
Alignment:
Q  49 cgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatgaaactgagaaagaatgtgtagaaagtg 146  Q
    |||||||||||| || ||||| ||||||||  |||  |||||||||||||| |||||| |  ||| ||||| |||||||||| | ||||| |||||||    
T  12644753 cgatgagtcttcacggtggaacgaaaggtgcatgcaggcaagttagcactccgacgctcaggtcagtaatggaactgagaaaaagtgtgtggaaagtg 12644850  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 34854227 - 34854301
Alignment:
Q  65 tggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatgaaactgagaaagaatgtgta 139  Q
    ||||| ||| |||||||||   || ||||||||||||||||| || | | |||||||||||||||||| ||||||    
T  34854227 tggaacgaacggtgtttgcagacacgttagcactctgacgctcaagttagtaatgaaactgagaaagagtgtgta 34854301  T

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Target: chr1 (Bit Score: 46; Significance: 1e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 4601645 - 4601520
Alignment:
Q  14 ctctggtgtgacagttacggcttctggcacggcggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattca 113  Q
    |||||||||||| || |  | ||| |||| ||||||||| |||||||||| ||||| ||||||||  |||  ||| |||||||||| |||||| || |||    
T  4601645 ctctggtgtgacggtaattgtttccggcatggcggcgataagtcttcgcggtggaacgaaaggtgactgcaggcacgttagcactccgacgctcaagtca 4601546  T
Q  114 ttaatgaaactgagaaagaatgtgta 139  Q
     |||||||||||||||| ||||||||    
T  4601545 gtaatgaaactgagaaataatgtgta 4601520  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 14255184 - 14255063
Alignment:
Q  18 ggtgtgacagttacggcttctggcacggcggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaa 117  Q
    |||||||| || | |||||| ||| ||||||||||||||||||| | ||||| ||| ||||  |||  ||| | ||||||||  ||||| || |||||||    
T  14255184 ggtgtgacggtaatggcttccggcgcggcggcgatgagtcttcgtggtggaacgaagggtgcctgcaagcacgatagcactccaacgctcaagtcattaa 14255085  T
Q  118 tgaaactgagaaagaatgtgta 139  Q
    ||||||||||||||| ||||||    
T  14255084 tgaaactgagaaagagtgtgta 14255063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 146
Target Start/End: Original strand, 16050360 - 16050459
Alignment:
Q  47 ggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatgaaactgagaaagaatgtgtagaaagtg 146  Q
    ||||||||||||||||| ||||  ||||||| | |||  ||| ||||||||||  ||||| || ||||| ||| |||||||||||| |||||||||||||    
T  16050360 ggcgatgagtcttcgcggtggatagaaaggtatctgcaggcacgttagcactccaacgctcaagtcattgatggaactgagaaagagtgtgtagaaagtg 16050459  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 22414743 - 22414840
Alignment:
Q  49 cgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatgaaactgagaaagaatgtgtagaaagtg 146  Q
    ||||||||||| ||| ||||| ||||||||   ||  ||| ||||||||||||||||| || ||| |||||||||||| ||| | |||||||||||||    
T  22414743 cgatgagtctttgcggtggaacgaaaggtgcccgcaggcacgttagcactctgacgctcaagtcagtaatgaaactgaaaaaaagtgtgtagaaagtg 22414840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 26977676 - 26977804
Alignment:
Q  17 tggtgtgacagttacggcttctggcacggcggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcatta 116  Q
    |||| ||||||| |||| ||| || || |||| ||||| |||| ||| ||||| ||||||||  |||  ||| ||||||||||  ||||| || ||| ||    
T  26977676 tggtatgacagtaacggtttccggtacagcggtgatgaatctttgcggtggaacgaaaggtgcctgcaggcacgttagcactccaacgctcaagtcagta 26977775  T
Q  117 atgaaactgagaaagaatgtgtagaaagt 145  Q
    ||| ||| |||||||| ||||||||||||    
T  26977776 atggaaccgagaaagagtgtgtagaaagt 26977804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 12177340 - 12177451
Alignment:
Q  35 ttctggcacggcggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatgaaactgagaaagaat 134  Q
    |||||| ||| ||||| |||||  ||||| ||||| ||||||||  | |  ||| |||||||||| ||| || || ||| ||||| |||||||||||| |    
T  12177340 ttctggtacgacggcgttgagtaatcgcggtggaacgaaaggtgcctacatgcacgttagcactccgacactcaagtcagtaatggaactgagaaagagt 12177439  T
Q  135 gtgtagaaagtg 146  Q
    ||||||||||||    
T  12177440 gtgtagaaagtg 12177451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 25537338 - 25537423
Alignment:
Q  14 ctctggtgtgacagttacggcttctggcacggcggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactc 99  Q
    |||||||||||| || |||| ||||||||||||||||| ||||||||||| ||||| ||||||||  |||  ||| ||||||||||    
T  25537338 ctctggtgtgacggtaacggtttctggcacggcggcgaagagtcttcgcggtggaacgaaaggtgcctgcaagcacgttagcactc 25537423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 31202586 - 31202531
Alignment:
Q  14 ctctggtgtgacagttacggcttctggcacggcggcgatgagtcttcgcgatggaa 69  Q
    |||||||||||| || ||| |||||| ||||||||||||||||||||||| |||||    
T  31202586 ctctggtgtgacggtaacgacttctgacacggcggcgatgagtcttcgcggtggaa 31202531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 20025253 - 20025359
Alignment:
Q  51 atgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatgaaactgagaaagaatgtgtagaaagtgaagt 150  Q
    ||||||||||||| ||| | ||||||||| ||| | || |||| |||||  |||||    |||  ||||||||||||||||| |||||||||||||  ||    
T  20025253 atgagtcttcgcggtgggacgaaaggtgtctgcacacacgttaacactccaacgctactgtcaggaatgaaactgagaaagagtgtgtagaaagtgttgt 20025352  T
Q  151 gtaaagt 157  Q
    |||||||    
T  20025353 gtaaagt 20025359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 8706 - 8603
Alignment:
Q  42 acggcggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatgaaactgagaaagaatgtgtaga 141  Q
    ||||||||| |||||||| ||| |||||| ||||||||||||  ||| |||||||||  |||||| || ||| |||||||||||| ||| | ||||||||    
T  8706 acggcggcgttgagtctttgcggtggaataaaaggtgtttgc-agcacgttagcacttcgacgctcaagtcagtaatgaaactgaaaaacagtgtgtaga 8608  T
Q  142 aagtg 146  Q
    |||||    
T  8607 aagtg 8603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 21416699 - 21416803
Alignment:
Q  42 acggcggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatgaaactgagaaagaatgtgtaga 141  Q
    ||||||||| ||||| |||||||||||    ||||||| |||  ||  |||||||||| |||||| || ||| |||||||||||||||||| ||||||||    
T  21416699 acggcggcgttgagtattcgcgatggatctgaaggtgtctgcatgctcgttagcactccgacgctcaagtcagtaatgaaactgagaaagagtgtgtaga 21416798  T
Q  142 aagtg 146  Q
    |||||    
T  21416799 aagtg 21416803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 23269201 - 23269313
Alignment:
Q  36 tctggcacggcggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatgaaactgagaaagaatg 135  Q
    ||||| |||| ||||||||||||| ||| ||||| ||||||||| | |  ||||||||||||||  || || || ||| ||||| |||||| ||||| ||    
T  23269201 tctggtacggtggcgatgagtctttgcggtggaacgaaaggtgtctacaggcaagttagcactccaacacttaagtcagtaatggaactgataaagagtg 23269300  T
Q  136 tgtagaaagtgaa 148  Q
    |||||||||||||    
T  23269301 tgtagaaagtgaa 23269313  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 13754792 - 13754834
Alignment:
Q  115 taatgaaactgagaaagaatgtgtagaaagtgaagtgtaaagt 157  Q
    |||||||||||||||||| |||||||||||||  |||||||||    
T  13754792 taatgaaactgagaaagagtgtgtagaaagtgttgtgtaaagt 13754834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 13765023 - 13765065
Alignment:
Q  115 taatgaaactgagaaagaatgtgtagaaagtgaagtgtaaagt 157  Q
    |||||||||||||||||| |||||||||||||  |||||||||    
T  13765023 taatgaaactgagaaagagtgtgtagaaagtgttgtgtaaagt 13765065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 12449752 - 12449616
Alignment:
Q  3 ggtagataatactctggtgtgacagttacggcttctggcacggcggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctga 102  Q
    |||||| ||| ||||||||||||||| ||| |||  ||||| |||| |||||||||||| | ||| | ||||||||| ||   ||| |||||||||||||    
T  12449752 ggtagagaatgctctggtgtgacagtaacgactttcggcaccgcggtgatgagtcttcgtggtgggacgaaaggtgtctgtaggcacgttagcactctga 12449653  T
Q  103 cgctgaattcattaatgaaactgagaaagaatgtgta 139  Q
    |||| || ||| ||||| | |||| ||||| ||||||    
T  12449652 cgctcaagtcagtaatggagctgaaaaagagtgtgta 12449616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 22497427 - 22497351
Alignment:
Q  43 cggcggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatg 119  Q
    ||||||||||||||||||||||||||| |||||||| ||||   || |||||||||| |||||| || ||| |||||    
T  22497427 cggcggcgatgagtcttcgcgatggaacgaaaggtgcttgcagacacgttagcactccgacgctcaagtcagtaatg 22497351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 19331838 - 19331695
Alignment:
Q  14 ctctggtgtgacagttacggcttctggcacggcggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattca 113  Q
    |||||||||||||||||| | |||  | | ||| | || ||||||||||| ||||| |||||||| ||||  | | ||||| |||| |||||| || |||    
T  19331838 ctctggtgtgacagttacagtttcctgtatggctgtgacgagtcttcgcggtggaacgaaaggtgcttgcaggtacgttagtactccgacgcttaagtca 19331739  T
Q  114 ttaatgaaactgagaaagaatgtgtagaaagtgaagtgtaaagt 157  Q
     ||||| |||| |||||||  || |||||||||  |||||||||    
T  19331738 gtaatggaactaagaaagagagtatagaaagtgttgtgtaaagt 19331695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 31295689 - 31295568
Alignment:
Q  18 ggtgtgacagttacggcttctggcacggcggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaa 117  Q
    ||||||||||| |  ||||| ||  ||||| ||| ||||||||| | ||||| ||||| ||  |||  ||| |||||||||  |||||| || ||| |||    
T  31295689 ggtgtgacagtaatagcttccggtgcggcgacgacgagtcttcgaggtggaacgaaagttgcctgcaggcatgttagcacttcgacgctcaagtcagtaa 31295590  T
Q  118 tgaaactgagaaagaatgtgta 139  Q
    ||||||||||||||| ||||||    
T  31295589 tgaaactgagaaagagtgtgta 31295568  T

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Target: scaffold0084 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 831 - 894
Target Start/End: Complemental strand, 30963 - 30900
Alignment:
Q  831 acagctcggcaggaagagcaaacatcacaacagttgatcagagccatactaccaaatggccaaa 894  Q
    |||||| ||||||||||| ||||||||||| ||||  ||||||||| |||||||||||||||||    
T  30963 acagcttggcaggaagagaaaacatcacaaaagttagtcagagccacactaccaaatggccaaa 30900  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 36267466 - 36267561
Alignment:
Q  49 cgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatgaaactgagaaagaatgtgtagaaag 144  Q
    ||||||||||||||  ||||||||||||||  |||  ||| |||| |||||  ||||| || ||| |||||||||||||||||| |||||||||||    
T  36267466 cgatgagtcttcgcagtggaatgaaaggtgcctgcatgcatgttaacactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtagaaag 36267561  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 29137837 - 29137959
Alignment:
Q  17 tggtgtgacagttacggcttctggcacggcggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcatta 116  Q
    ||||||||  || |||||||| ||||||||| ||||||||| ||| | ||||| ||||| ||| |||  | | |||||||| | |||||| || ||||||    
T  29137837 tggtgtgatggtaacggcttccggcacggcgacgatgagtcatcgaggtggaacgaaagatgtctgcaggtacgttagcacaccgacgctcaagtcatta 29137936  T
Q  117 atgaaactgagaaagaatgtgta 139  Q
    ||| |||||||||||| ||||||    
T  29137937 atgcaactgagaaagagtgtgta 29137959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 15390743 - 15390682
Alignment:
Q  14 ctctggtgtgacagttacggcttctggcacggcggcgatgagtcttcgcgatggaatgaaag 75  Q
    |||| ||||||| || |||||||| |||||||| |||||||||||||||||||||| |||||    
T  15390743 ctctagtgtgacggtaacggcttccggcacggcagcgatgagtcttcgcgatggaacgaaag 15390682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 18770323 - 18770379
Alignment:
Q  90 gttagcactctgacgctgaattcattaatgaaactgagaaagaatgtgtagaaagtg 146  Q
    ||||||||||||||||| || ||| |||||||| ||||||||| |||||||||||||    
T  18770323 gttagcactctgacgctcaagtcagtaatgaaattgagaaagagtgtgtagaaagtg 18770379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 20120273 - 20120412
Alignment:
Q  7 gataatactctggtgtgacagttacggcttctggcacggcggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgct 106  Q
    ||||||||||  ||||||| || |||||||  ||||||  || | | | ||||| || ||||| ||||||||| |||  ||| |||||||||| ||| ||    
T  20120273 gataatactccagtgtgacggtaacggctttcggcacgctggtgttaaatcttcacggtggaacgaaaggtgtctgcaggcacgttagcactccgactct 20120372  T
Q  107 gaattcattaatgaaactgagaaagaatgtgtagaaagtg 146  Q
     || ||| |||||||||||||||||| ||||| |||||||    
T  20120373 caagtcagtaatgaaactgagaaagagtgtgtggaaagtg 20120412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 146
Target Start/End: Original strand, 45714961 - 45715060
Alignment:
Q  47 ggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatgaaactgagaaagaatgtgtagaaagtg 146  Q
    ||||||||||||||  | ||||| ||||||||  |||  ||| ||||||||||  ||||| || ||| |||||||||||||||||| |||||| ||||||    
T  45714961 ggcgatgagtcttcctggtggaacgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtg 45715060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 3586324 - 3586428
Alignment:
Q  42 acggcggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatgaaactgagaaagaatgtgtaga 141  Q
    |||||| || |||||||| ||| ||||||||||||||  |||  ||| ||||| |||| |||||| || ||| ||||| |||||||||| | || |||||    
T  3586324 acggcgacgttgagtctttgcggtggaatgaaaggtgcatgccggcacgttaggactccgacgctcaagtcagtaatggaactgagaaaaagtgagtaga 3586423  T
Q  142 aagtg 146  Q
    |||||    
T  3586424 aagtg 3586428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 146
Target Start/End: Complemental strand, 45258277 - 45258178
Alignment:
Q  47 ggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatgaaactgagaaagaatgtgtagaaagtg 146  Q
    ||||||||||||||||| ||||| ||||| ||| |||  ||| |||| |||||  | ||| || | | |||||||||| ||||||||||||| |||||||    
T  45258277 ggcgatgagtcttcgcggtggaacgaaagatgtctgcaggcacgttaacactccaaagctcaagtaagtaatgaaactaagaaagaatgtgtcgaaagtg 45258178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 15825138 - 15825219
Alignment:
Q  65 tggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatgaaactgagaaagaatgtgtagaaagtg 146  Q
    ||||| |||| |||| |||  ||| ||||||||| ||||||| || ||  ||||| |||||||||||| |||||||||||||    
T  15825138 tggaacgaaatgtgtctgcaggcacgttagcactttgacgctcaagtcggtaatggaactgagaaagagtgtgtagaaagtg 15825219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 7018 - 6893
Alignment:
Q  14 ctctggtgtgacagttacggcttctggcacggcggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattca 113  Q
    |||||||||||| || |||||||| ||||||||| ||||||||||||| | ||||| ||||| || | |   ||| |||||  |||||||||| || |||    
T  7018 ctctggtgtgacggtaacggcttccggcacggcgccgatgagtcttcgtggtggaacgaaagatgctggtaggcacgttaggtctctgacgctcaagtca 6919  T
Q  114 ttaatgaaactgagaaagaatgtgta 139  Q
     || |||||||||||| || ||||||    
T  6918 gtattgaaactgagaacgagtgtgta 6893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 12683753 - 12683850
Alignment:
Q  49 cgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatgaaactgagaaagaatgtgtagaaagtg 146  Q
    ||||||||||| ||| ||||| ||||||||  |||  ||| ||||||||||  ||||| || | | |||||||||||||||||| |||||||||||||    
T  12683753 cgatgagtctttgcggtggaacgaaaggtgcctgcaggcacgttagcactccaacgctcaagttagtaatgaaactgagaaagagtgtgtagaaagtg 12683850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 15742307 - 15742186
Alignment:
Q  18 ggtgtgacagttacggcttctggcacggcggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaa 117  Q
    |||||||| || |||| ||||| ||||||| ||||||||||||| | ||||  ||||||||  |||  ||| ||||||||||| ||||| || ||| |||    
T  15742307 ggtgtgacggtaacggtttctgacacggcgacgatgagtcttcgtggtggagcgaaaggtgcctgctggcacgttagcactcttacgctcaagtcagtaa 15742208  T
Q  118 tgaaactgagaaagaatgtgta 139  Q
    || |||||||||| | ||||||    
T  15742207 tggaactgagaaaaagtgtgta 15742186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 7846 - 7950
Alignment:
Q  42 acggcggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatgaaactgagaaagaatgtgtaga 141  Q
    |||| |||||||||||||| || ||||| ||||||||  ||   ||| ||||||||||| ||||| || ||| ||||| || ||||||||| ||||||||    
T  7846 acggtggcgatgagtcttcacggtggaaggaaaggtgcatgtaggcacgttagcactctaacgctcaaatcagtaatgcaattgagaaagagtgtgtaga 7945  T
Q  142 aagtg 146  Q
    |||||    
T  7946 aagtg 7950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 146
Target Start/End: Original strand, 35175 - 35318
Alignment:
Q  3 ggtagataatactctggtgtgacagttacggcttctggcacggcggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctga 102  Q
    |||||||||  ||| |||||||  || |||||||| || ||||||||| ||||||||||   || || |||| ||| ||||  ||| |||||||||||||    
T  35175 ggtagataaagctccggtgtgatggtaacggcttccggtacggcggcgttgagtcttcgtagtgcaacgaaatgtgcttgcaggcacgttagcactctga 35274  T
Q  103 cgctgaattcattaatgaaactgagaaagaatgtgtagaaagtg 146  Q
    | || || ||| ||| | |||||||||||| ||||| |||||||    
T  35275 cactcaagtcagtaacggaactgagaaagagtgtgtggaaagtg 35318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 17143869 - 17143775
Alignment:
Q  52 tgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatgaaactgagaaagaatgtgtagaaagtg 146  Q
    ||||||||| || ||| ||||||||||||     ||| |||||||||| |||||| || ||| ||||| |||||||||||| |||||||||||||    
T  17143869 tgagtcttcacggtgggatgaaaggtgttcttaggcacgttagcactccgacgctcaagtcagtaatggaactgagaaagagtgtgtagaaagtg 17143775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 12108372 - 12108475
Alignment:
Q  34 cttctggcacggcggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatgaaactgagaaagaa 133  Q
    |||| |||||| || ||||||||| ||| | ||||||||||||||  |||  ||| |||| ||||| |||||| || | | ||||| |||||||||||||    
T  12108372 cttccggcacgacgacgatgagtcctcgtggtggaatgaaaggtgcatgcatgcatgttaccactccgacgctcaagttagtaatggaactgagaaagaa 12108471  T
Q  134 tgtg 137  Q
    ||||    
T  12108472 tgtg 12108475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 1770796 - 1770890
Alignment:
Q  52 tgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatgaaactgagaaagaatgtgtagaaagtg 146  Q
    |||||||| ||| ||||| ||||||||| |||  ||| ||||| |||| |||||| || | | ||||| ||||||| |||| |||||||||||||    
T  1770796 tgagtctttgcggtggaaggaaaggtgtctgcaagcatgttagtactccgacgctcaagttagtaatggaactgaggaagagtgtgtagaaagtg 1770890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 143
Target Start/End: Complemental strand, 20618 - 20526
Alignment:
Q  51 atgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatgaaactgagaaagaatgtgtagaaa 143  Q
    ||||| ||||||| ||||| |||||||| || |   || ||||||||||||||||| || ||| ||| | |||||||||||| ||||||||||    
T  20618 atgaggcttcgcggtggaacgaaaggtgcttacaaacatgttagcactctgacgctcaagtcactaaaggaactgagaaagagtgtgtagaaa 20526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 22851 - 22935
Alignment:
Q  46 cggcgatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatgaaactgagaaa 130  Q
    |||||||| ||||||||  ||| | ||||||||  |||| ||| ||||||||||||||||| || ||| ||||| ||||||||||    
T  22851 cggcgatgggtcttcgcagtgggacgaaaggtgcctgcgggcacgttagcactctgacgctcaagtcagtaatggaactgagaaa 22935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 10840 - 10758
Alignment:
Q  50 gatgagtcttcgcgatggaatgaaaggtgtttgcgcgcaagttagcactctgacgctgaattcattaatgaaactgagaaaga 132  Q
    |||||||||||| | ||||||||||||||| ||   ||| |||||||||| |||| | || ||| ||||| ||||||||||||    
T  10840 gatgagtcttcgtggtggaatgaaaggtgtctgtaggcatgttagcactccgacgttcaagtcagtaatggaactgagaaaga 10758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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