View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5219_low_3 (Length: 679)
Name: NF5219_low_3
Description: NF5219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5219_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 78 - 671
Target Start/End: Original strand, 45143652 - 45144252
Alignment:
| Q |
78 |
ttgcaaggaaatgtgagaattctacattcaaattaaagaaagaactggtgaattgagagaattcacgatgattagagatacagaaca------------- |
164 |
Q |
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| T |
45143652 |
ttgcaaggaaatgtgacaattctacattcaaattaaagaaagaactggtgaattgagagaattcacgatgattagagatacagaacagaacagttactac |
45143751 |
T |
|
| Q |
165 |
-agtgcaagtgagtgacataataataataaaataaaagctaactaattaactacaaagtgggcattgaactaacccattttcattacaatcaacacactt |
263 |
Q |
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| T |
45143752 |
aagtgcaagtgagtaacataataataa---aataaaagataactaa----ctacaaattgggcactgaactaacccattttcattacaatcaccacactt |
45143844 |
T |
|
| Q |
264 |
aacaacaacagtgttcccctgtttctgtttattcaccatcttacagcttccgttacatcgaaaacaaggcaagaatctcatatcaccacaaccctcacat |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45143845 |
aacaacaacagtgttcccctgtttctgtttattcaccatcttacagcttccgttacatcgaaaacaaggcaagaatctcatatcaccacaaccctcacat |
45143944 |
T |
|
| Q |
364 |
acacctcctccaccaacagcttttcttggcaaaccctgaataacctctcccaacaaaccctcttccacaaccttcaacatctcttcagcaccaccgatat |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45143945 |
acacctcctccaccaacagcttttcttggcaaaccctgaataacctctcccaacaaaccctcttccacaaccttcaacatctcttcagcaccaccgatat |
45144044 |
T |
|
| Q |
464 |
aatatcccttcacaaacactctcggcggaatcaccatcttctctttcagaagctccctcagttcctctttaaacccactatccatcgaaacgtcacgctc |
563 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45144045 |
aatatcccttcacaaacactctcggcggaaccaccatcttctctttcagaagctccctcagttcctctttaaacccactatccatcgaaacgtcacgctc |
45144144 |
T |
|
| Q |
564 |
gcatatttgtacaccaaatgcatcaaaagctgctctcaccgcattgcaagcctcaaatgtcctccgaacacctctcaacgttgttgtatagatcaccact |
663 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45144145 |
gcatatttgtacaccaaatgcatcaaaagctgctctcaccgcattgcaagcctcaaatgtcctccgaacacctctcaacgttgttgtatagatcaccact |
45144244 |
T |
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| Q |
664 |
ttcttctc |
671 |
Q |
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|||||||| |
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| T |
45144245 |
ttcttctc |
45144252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 45143516 - 45143571
Alignment:
| Q |
21 |
tggaggtttatgtgggaaacc-aagagagagtctattattgacatagcaaactata |
75 |
Q |
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| T |
45143516 |
tggaggtttatgtgggaaacccaagagagagtctattattgacatagcaaactata |
45143571 |
T |
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