View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5219_low_4 (Length: 495)
Name: NF5219_low_4
Description: NF5219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5219_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 102 - 480
Target Start/End: Complemental strand, 4865344 - 4864962
Alignment:
| Q |
102 |
gctttcttaataaaaattacatactccaatgatgtatgggaaattttacccctctttcatttacatgaccagctctttcacttaatgagagtgagagttt |
201 |
Q |
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| T |
4865344 |
gctttcttaataaaaattacatactccaatgatgtatgggaaattttacctctatttcatttacaggaccagctctttcacttaatgagagtgagagttt |
4865245 |
T |
|
| Q |
202 |
aaaatatgaaaatggtgatgtagtcgccactgnnnnnnnn----aatgtgactactttaaaatgcagccataattattttaatgtggattttgtaacaaa |
297 |
Q |
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| T |
4865244 |
aaaatatgataatggtgatgtagtcgccactgttttttttttttaatgtgactactttaaaatgcagccataattattttaatgtggtttttgtaacaaa |
4865145 |
T |
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| Q |
298 |
gagatcttttgaccatttcaaagttgtcaatttcacagaaatttcccttcctacctctcaatgtttataagaataaataaatgtaacttctagcattcca |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4865144 |
gagatcttttgaccatttcaaagttgtcaatttcacagaaatttcccttcctacctttcaatgtttataagaataaataaatgtaacttctagcattcca |
4865045 |
T |
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| Q |
398 |
aacctcaacaacaacaacataatcaatccttcttcaccctcttctcacacaactatggcaaactcgataaacaagaaacttta |
480 |
Q |
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| T |
4865044 |
aacctcaacaacaacaacataatcaatccttcttcaccctcttctcacacaactatggcaaactcgataaacaagaaacttta |
4864962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 406 - 471
Target Start/End: Complemental strand, 4673814 - 4673749
Alignment:
| Q |
406 |
caacaacaacataatcaatccttcttcaccctcttctcacacaactatggcaaactcgataaacaa |
471 |
Q |
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| T |
4673814 |
caacaacaacagaatcaacccttcttcaccctcttctcacacagctatggcaaactccataaacaa |
4673749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 4865419 - 4865344
Alignment:
| Q |
1 |
tctttcctaattaagagataacttgc--------ctaactgtctttagtgatgttatgtgccctctttctcatctg |
68 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4865419 |
tctttcctaattaagagataacttgcgctccaagctaactgtctttagtgatgttatgtgccctctttctcatctg |
4865344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 469
Target Start/End: Original strand, 4711028 - 4711134
Alignment:
| Q |
363 |
tataagaataaataaatgtaacttctagcattccaaacctcaacaacaacaacataatcaatccttcttcaccctcttctcacacaactatggcaaactc |
462 |
Q |
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| T |
4711028 |
tataacaataaataaatgcaacttcaagcatcctaacactcaacaagaaaaacaaaatctactcttcttcactctattttcacataactatggcaaactc |
4711127 |
T |
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| Q |
463 |
gataaac |
469 |
Q |
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|
|||||| |
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| T |
4711128 |
cataaac |
4711134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 4637942 - 4637897
Alignment:
| Q |
426 |
cttcttcaccctcttctcacacaactatggcaaactcgataaacaa |
471 |
Q |
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||||||||| ||||||||||||| ||||||||||||| |||||||| |
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| T |
4637942 |
cttcttcactctcttctcacacagctatggcaaactccataaacaa |
4637897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 4644780 - 4644735
Alignment:
| Q |
426 |
cttcttcaccctcttctcacacaactatggcaaactcgataaacaa |
471 |
Q |
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||||||||| ||||||||||||||||||||||||| | |||||||| |
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| T |
4644780 |
cttcttcactctcttctcacacaactatggcaaacaccataaacaa |
4644735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 4654583 - 4654539
Alignment:
| Q |
427 |
ttcttcaccctcttctcacacaactatggcaaactcgataaacaa |
471 |
Q |
| |
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|||||||| ||||||||||||| |||||||||||| |||||||| |
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| T |
4654583 |
ttcttcacactcttctcacacagatatggcaaactccataaacaa |
4654539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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