View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5219_low_5 (Length: 457)
Name: NF5219_low_5
Description: NF5219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5219_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 19 - 440
Target Start/End: Original strand, 41939597 - 41940018
Alignment:
| Q |
19 |
ctgtgggaaactttggtattgttgttgtgggtccgattttaagcacaaaagatcacttaaagatcatatcaaggcttttggaaatggacataaagcttat |
118 |
Q |
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| T |
41939597 |
ctgtgggaaactttggtattgttgttgtgggtccgattttaagcacaaaagatcacttaaagatcatatcaaggcttttggaaatggacataaagcttat |
41939696 |
T |
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| Q |
119 |
ggaattgacgaatgtcttgatcaagatgatgaacatggtggctctgaaattgagcaagaaaatgaatcttttcagtcatagtttgatgtatgtgtgtttt |
218 |
Q |
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| T |
41939697 |
ggaattgacgaatgtcttgatcaagatgatgaacatggtggctctgaaattgagcaagaaaatgaatcttttcagtcatagtttgatgtatgtatgtttt |
41939796 |
T |
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| Q |
219 |
aactataaagacaagacagctatggacatgttttgcactaattacattggtgactaagactagtagtatgactaaatttattttgtcttctttattaatt |
318 |
Q |
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| T |
41939797 |
aactataaagacaagacagctatggacatgttttgcactaattacattggtgactaagactagtagtatgactaaatttattttgtcttctttattaatt |
41939896 |
T |
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| Q |
319 |
tcctttttgtctttgtatttgcaatatatactcagatatgttgtggcaaattttggattgatatctctccctctctctccttaattagtgtacatgacat |
418 |
Q |
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| T |
41939897 |
tcctttttgtctttgtatttgcaatatatactcagatatgttgtggcaaattttggattgatatctctccctctctctccttaattagtgtacatgacat |
41939996 |
T |
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| Q |
419 |
gccgattcaagcttgtattata |
440 |
Q |
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| T |
41939997 |
gccgattcaagcttgtattata |
41940018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 36570109 - 36570198
Alignment:
| Q |
20 |
tgtgggaaactttggtattgttgttgtgggtccgattttaagcacaaaagatcacttaaagatcatatcaaggcttttggaaatggacat |
109 |
Q |
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| T |
36570109 |
tgtggaaagctttggtattgtatctgtggttctgattttaaacacaagaggtctcttaaagatcatatcaaagcttttggaagtggacat |
36570198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 21035671 - 21035565
Alignment:
| Q |
20 |
tgtgggaaactttggtattgttgttgtgggtccgattttaagcacaaaagatcacttaaagatcatatcaaggcttttggaaatggacataaagcttatg |
119 |
Q |
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| T |
21035671 |
tgtggaaagctttggtattgtctttgtggttcggattttaagcataagcgatcgcttaaagatcatataagagcttttgggagtggtcatgctgcttatg |
21035572 |
T |
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| Q |
120 |
gaattga |
126 |
Q |
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||||||| |
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| T |
21035571 |
gaattga |
21035565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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