View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5219_low_6 (Length: 404)
Name: NF5219_low_6
Description: NF5219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5219_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 33820459 - 33820101
Alignment:
| Q |
18 |
aatgaaatggtttattttagtcttattcaccaaagttatttgataaaacatagttgatatatctttctatatataagggagtagnnnnnnnnnnnnnnnn |
117 |
Q |
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| T |
33820459 |
aatgaaatggtttattttagtcttattcaccaaagttatttgataaaacatagttgatatatctttctatatacaagggagtagaaaaagaaaaa----- |
33820365 |
T |
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| Q |
118 |
nnnnngaagataaactcagatgttagtgttcatttgaagtttaaaatgaaaggtttatcttagcatttgttagcaagatcttttattctaagatatgtac |
217 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
33820364 |
------aaaataaactcagatgttagtgttcatttgaagtttaaaatgaaaggtttatcttagcact-gttagcaagatcttttattctaagatatgtac |
33820272 |
T |
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| Q |
218 |
tcaaataatatccttgaagattgcccatgctcgaaagaagccatttcggatgttagtagcttgtaagtagttgcaacaaatgcaattttgtttnnnnnnn |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33820271 |
tcaaataatatccttgaagattgcccatgctcgaaagaagccatttcggatgttagtagcttgtaagtagttacaacaaatgcaattttgtttaaaaaaa |
33820172 |
T |
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| Q |
318 |
tatcaaagcatcaaaatttgatgattagaagaaacttgcataagttttcaagattagttagaagaagttag |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33820171 |
tatcaaagcatcaaaatttgatgattagaagaaacttgcataagttttcaagattagttagaagaagttag |
33820101 |
T |
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