View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5220-Insertion-1 (Length: 937)
Name: NF5220-Insertion-1
Description: NF5220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5220-Insertion-1 |
 | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 614; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 31 - 699
Target Start/End: Complemental strand, 5332447 - 5331781
Alignment:
| Q |
31 |
tttcatttaataatatgcttaagaaacgcacataattttttaatcatgtttgtgttatatattattccgtccacacatgaatacatgatacacatgcata |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| |
|
|
| T |
5332447 |
tttcatttaataatatgcttaagaaacgcacataattttttaatcatgtttgtgttatatattattccttccatacatgaatacatgatacacatacata |
5332348 |
T |
|
| Q |
131 |
actaatgagatatatacttcaattagttaatttgagaaacctagtgatgggttcaattgaagaaatgaaagagccatatatattagcaaagaaatatgac |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5332347 |
actaatgagatatatacttcaattagttaatttgagaaacctagt--tgggttcaattgaagaaatgaaagagccatatatattagcaaagaaatatgac |
5332250 |
T |
|
| Q |
231 |
tggaaagggtttgtgaatcttttcgatcacaataaaacgctattgaatagacaaatagacttgcatcaaagcacaccttttcactgtgcagcacattgtg |
330 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
5332249 |
tggaaagggtttgtgaattttttcgatcacaataaaacgctattgaatagacaaatagacttgcatcaaagcactccttttcactatgcagcacattgtg |
5332150 |
T |
|
| Q |
331 |
gtagcccagatatgtataacaaaatgctatcaatggtgggtccatcaatgcaacatgtgttgaggatgaaagatgacatgggaaacacaccacttcatga |
430 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5332149 |
gtagcccagacatgtataacaaaatgctatcaatggtggatccatcaatgcaacatgtgttgaggatgaaagatgacatgggaaacacaccacttcatga |
5332050 |
T |
|
| Q |
431 |
agtggcattcacaggagaggttgaaatgacaaagagtacattgatgaaagacatggaagcacaggcacagccagagtttccattgcagcagccattacta |
530 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5332049 |
agtggcattcacaggagaggttgaaatgacaaagagtacattgatgaaagacatggaagcacaggcacagtcagagtttccattgcagcagccattacta |
5331950 |
T |
|
| Q |
531 |
gaagtgagaaacaaacttggagaaaccccggtttatagggcagctgctcttggaaagacaaatttgatcaagtgttttcttgacgaattgagcgtggatt |
630 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5331949 |
gaagtgagaaacaaacttggagaaaccccggtttataggacagctgctcttggaaagacaaatttgattaagtgttttcttgacgaattgagcgtggatt |
5331850 |
T |
|
| Q |
631 |
taagggttcattttcatagaactgttgataaaatgtctattcttgacattgctgtcattggccaattct |
699 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5331849 |
taagggttcattttcatagaactgttgataaaatgtctattcttgacattgctgtcattggccaattct |
5331781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 180 - 699
Target Start/End: Original strand, 5314368 - 5314881
Alignment:
| Q |
180 |
ggttcaattgaagaaatgaaagagccatatatattagcaaagaaatatgactggaaagggtttgt-gaatcttttcgatcacaataaaacgctattgaat |
278 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||| |||| | |||||||| ||| | |||| ||||| | | | ||| |||||| || |
|
|
| T |
5314368 |
ggttcaattgaaaaaatgaaagaaccatatatattagcaaagagatataattggaaaggatttttagaat-ttttccttaaacacaaagatctattggat |
5314466 |
T |
|
| Q |
279 |
agacaaatagacttgcatcaaagcacaccttttcactgtgcagcacattgtggtagcccagatatgtataacaaaatgctatcaatggtgggtccatcaa |
378 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| || ||||| |||||||| |
|
|
| T |
5314467 |
aaacaaatagacttgcatcaaagcactccttttcactatgcagcacattgtggtagcccagaaatgtacaacaaaatgctattaaaggtggatccatcaa |
5314566 |
T |
|
| Q |
379 |
---tgcaacatgtgttgaggatgaaagatgacatgggaaacacaccacttcatgaagtggcattcacaggagaggttgaaatgacaaagagtacattgat |
475 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| ||||| |
|
|
| T |
5314567 |
acatgcaacatgtgttgaggatgcaagatgacatgggaaacacaccacttcatgaagtggctttcacaggtgaagttgaaatgacaaagagtatattgaa |
5314666 |
T |
|
| Q |
476 |
gaaagacatggaagcacaggcacagccagagtttccattgcagcagccattactagaagtgagaaacaaacttggagaaaccccggtttatagggcagct |
575 |
Q |
| |
|
|||||| |||| || | || ||| ||||||| | |||||| || | |||||||||||||||||||||| || || |||||||| ||| |
|
|
| T |
5314667 |
gaaagaagaggaaacaatgtcagagc---agtttcc------gaggccattgttacagttgagaaacaaacttggagaaactccagtgtatagggctgct |
5314757 |
T |
|
| Q |
576 |
gctcttggaaagacaaatttgatcaagtgttttcttgacgaattgagcgtggatttaagggttcattttcatagaactgttgataaaatgtctattcttg |
675 |
Q |
| |
|
|||||||| ||||||| |||| | || || ||| |||| || ||| | ||||||||||||| |||||||||||| |||| |||||| ||||| |||||| |
|
|
| T |
5314758 |
gctcttgggaagacaagtttggttaaatgctttgttgaagagttgggtgtggatttaagggatcattttcataggactggtgataagatgtccattcttc |
5314857 |
T |
|
| Q |
676 |
acattgctgtcattggccaattct |
699 |
Q |
| |
|
||| ||||||||||| ||||||| |
|
|
| T |
5314858 |
acactgctgtcattgatcaattct |
5314881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 784 - 877
Target Start/End: Complemental strand, 37038035 - 37037942
Alignment:
| Q |
784 |
ttttagcgtggaaagccttctcaatgcgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaa |
877 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||| ||||| |||||||||||||| | ||||||||||| | |||||||| |||||| |||||||| |
|
|
| T |
37038035 |
ttttagcgaggaaaaccttctcaatgtgagaaaggagaaaccacgggacccttgggcctcttaaactttcactataacgataatgagaatacaa |
37037942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 717 - 751
Target Start/End: Complemental strand, 37038108 - 37038074
Alignment:
| Q |
717 |
taatttccctcctccgtgaactcaaaataggcact |
751 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37038108 |
taatttctctcctccgtgaactcaaaataggcact |
37038074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 698 - 936
Target Start/End: Complemental strand, 33808214 - 33807978
Alignment:
| Q |
698 |
ctgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaa |
797 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33808214 |
ctgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaa |
33808117 |
T |
|
| Q |
798 |
gccttctcaatgcgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac |
897 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33808116 |
accttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac |
33808017 |
T |
|
| Q |
898 |
ctaactatgtaactcaatttgtagatacaactctcacaa |
936 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33808016 |
ctaactatgtatctcaatttgtagatacaactctcacaa |
33807978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 698 - 936
Target Start/End: Complemental strand, 33811868 - 33811632
Alignment:
| Q |
698 |
ctgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaa |
797 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33811868 |
ctgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaa |
33811771 |
T |
|
| Q |
798 |
gccttctcaatgcgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac |
897 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811770 |
accttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac |
33811671 |
T |
|
| Q |
898 |
ctaactatgtaactcaatttgtagatacaactctcacaa |
936 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33811670 |
ctaactatgtatctcaatttgtagatacaactctcacaa |
33811632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 698 - 936
Target Start/End: Complemental strand, 33816786 - 33816550
Alignment:
| Q |
698 |
ctgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaa |
797 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33816786 |
ctgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaa |
33816689 |
T |
|
| Q |
798 |
gccttctcaatgcgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac |
897 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816688 |
accttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac |
33816589 |
T |
|
| Q |
898 |
ctaactatgtaactcaatttgtagatacaactctcacaa |
936 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33816588 |
ctaactatgtatctcaatttgtagatacaactctcacaa |
33816550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 782 - 877
Target Start/End: Complemental strand, 16698601 - 16698504
Alignment:
| Q |
782 |
aattttagcgtggaaagccttctcaatgcgagtaagg-aaaaaccacgggacccgtaggcctcttaaatct-ccactataataataatgggaatacaa |
877 |
Q |
| |
|
|||||||| ||||||| ||||||||||| ||| |||| ||||| | ||||||| | | ||||||||| || |||||||||| ||||||||||||||| |
|
|
| T |
16698601 |
aattttagtgtggaaatccttctcaatgtgagaaagggaaaaattatgggacccttggacctcttaaaacttccactataatgataatgggaatacaa |
16698504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 2e-91; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 699 - 936
Target Start/End: Original strand, 31151926 - 31152164
Alignment:
| Q |
699 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaag |
798 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
31151926 |
tgttgggaaatgcctgcataatttccctcctctctgaactcaaaataggcactttagcggaaacataaaatgacacacaacaaaattttaatgtggaaaa |
31152025 |
T |
|
| Q |
799 |
ccttctcaatgcgagtaaggaaaa-accacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac |
897 |
Q |
| |
|
||||||||||| ||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31152026 |
ccttctcaatgtgagtaagaaaaaaaccacgggatccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcagatggac |
31152125 |
T |
|
| Q |
898 |
ctaactatgtaactcaatttgtagatacaactctcacaa |
936 |
Q |
| |
|
||||||| ||| || ||||| |||||||||||||||||| |
|
|
| T |
31152126 |
ctaactacgtatctaaatttatagatacaactctcacaa |
31152164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 699 - 896
Target Start/End: Complemental strand, 22981710 - 22981504
Alignment:
| Q |
699 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgt--aaaatgac-------acacaacaaaattttag |
789 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||||||||||||||||| ||||||| ||||||||||| ||||| | ||||| | |||||||| |
|
|
| T |
22981710 |
tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcact--agcggaaacgtgaaaaataagcgtaatgacacag-agaattttag |
22981614 |
T |
|
| Q |
790 |
cgtggaaagccttctcaatgcgagtaa-ggaaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc |
886 |
Q |
| |
|
|||||||| ||||||||||| ||| || |||||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||||||| | ||||||| |
|
|
| T |
22981613 |
cgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttcacc |
22981514 |
T |
|
| Q |
887 |
ctcaggtgga |
896 |
Q |
| |
|
|| ||||||| |
|
|
| T |
22981513 |
cttaggtgga |
22981504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 699 - 896
Target Start/End: Original strand, 23806698 - 23806904
Alignment:
| Q |
699 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgt--aaaatgac-------acacaacaaaattttag |
789 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||||||||||||||||| ||||||| ||||||||||| ||||| | ||||| | |||||||| |
|
|
| T |
23806698 |
tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcact--agcggaaacgtgaaaaataagcgtaatgacacag-agaattttag |
23806794 |
T |
|
| Q |
790 |
cgtggaaagccttctcaatgcgagtaa-ggaaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc |
886 |
Q |
| |
|
|||||||| ||||||||||| ||| || |||||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||||||| | ||||||| |
|
|
| T |
23806795 |
cgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttcacc |
23806894 |
T |
|
| Q |
887 |
ctcaggtgga |
896 |
Q |
| |
|
|| ||||||| |
|
|
| T |
23806895 |
cttaggtgga |
23806904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 775 - 920
Target Start/End: Original strand, 1111378 - 1111524
Alignment:
| Q |
775 |
acaacaaaattttagcgtggaaagccttctcaatgcgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccacta-taataataatgggaat |
873 |
Q |
| |
|
||||||||||||||| || |||| |||||| |||| | |||||||||| || ||||| | || | ||||||||||| | || ||||||||||| |||| |
|
|
| T |
1111378 |
acaacaaaattttagtgtagaaaaccttctgaatgtaaataaggaaaaatcatgggactcataagtctcttaaatctactataataataataatgagaat |
1111477 |
T |
|
| Q |
874 |
acaaatcttcaccctcaggtggacctaactatgtaactcaatttgta |
920 |
Q |
| |
|
||||| |||||||| | || ||||||||||||| ||||||||||| |
|
|
| T |
1111478 |
acaaactttcacccttacgtaaacctaactatgtatctcaatttgta |
1111524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 6e-89; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 699 - 933
Target Start/End: Complemental strand, 50603403 - 50603169
Alignment:
| Q |
699 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaag |
798 |
Q |
| |
|
|||||||||||||| | |||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
50603403 |
tgttgggaaatgccagtacaatttctctcctccgtgaactcaaaatagacactttagcgaaaacgtaaaatgacacacaataaaattttagcgtggaaaa |
50603304 |
T |
|
| Q |
799 |
ccttctcaatgcgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
898 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| |
|
|
| T |
50603303 |
ccttctcaatgtgagtaagaaaaaaccacggaacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcacctttagatggacc |
50603204 |
T |
|
| Q |
899 |
taactatgtaactcaatttgtagatacaactctca |
933 |
Q |
| |
|
||||||| || |||||||||||||||||||||||| |
|
|
| T |
50603203 |
taactatatatctcaatttgtagatacaactctca |
50603169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 699 - 896
Target Start/End: Original strand, 44782524 - 44782733
Alignment:
| Q |
699 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaatttt |
787 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||| | ||||||||| || | |||||| |
|
|
| T |
44782524 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacac--tagcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt |
44782620 |
T |
|
| Q |
788 |
agcgtggaaagccttctcaatgcgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
883 |
Q |
| |
|
|||||||||| |||||||||| ||| |||| |||||||||||||||| | | ||||||||| | ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
44782621 |
agcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaacttc |
44782720 |
T |
|
| Q |
884 |
accctcaggtgga |
896 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
44782721 |
acccttaggtgga |
44782733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 699 - 896
Target Start/End: Original strand, 54967210 - 54967419
Alignment:
| Q |
699 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaatttt |
787 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||| | ||||||||| || | |||||| |
|
|
| T |
54967210 |
tgttgggaaatgcctgcataatttccctcctccgtcaactcaaaataggcac--tagcggaaacgtgaaataaaagcgtaatgacaca-aagagaatttt |
54967306 |
T |
|
| Q |
788 |
agcgtggaaagccttctcaatgcgagtaa-ggaaaaaccacgggacccgtaggcctctt--aaatctccactataataataatgggaatacaa-atcttc |
883 |
Q |
| |
|
|||||||||| |||||||||| ||| || |||||||||||||||||| | |||||||| ||| ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
54967307 |
agcgtggaaaaccttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttc |
54967406 |
T |
|
| Q |
884 |
accctcaggtgga |
896 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
54967407 |
acccttaggtgga |
54967419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 782 - 904
Target Start/End: Complemental strand, 39298908 - 39298785
Alignment:
| Q |
782 |
aattttagcgtggaaagccttctcaatgcgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaa-atc |
880 |
Q |
| |
|
|||||||| ||| ||| ||||||||||| || ||||||||| |||||||||| | |||||||||| ||||||||||| |||| |||||||||| | | |
|
|
| T |
39298908 |
aattttagtgtgaaaaaccttctcaatgtgatgaaggaaaaatcacgggacccttgtgcctcttaaacttccactataatgataaagggaatacaacaac |
39298809 |
T |
|
| Q |
881 |
ttcaccctcaggtggacctaacta |
904 |
Q |
| |
|
|||||||| ||||||| ||||||| |
|
|
| T |
39298808 |
ttcacccttaggtggatctaacta |
39298785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 711 - 896
Target Start/End: Original strand, 54979854 - 54980051
Alignment:
| Q |
711 |
cctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattttagcgtggaaagc |
799 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||| |||| |||||| || | ||||||||| |||||| | |
|
|
| T |
54979854 |
cctgcataatttccctcctccgtcaactcaaaataagcact--agcggaaacgtgaaataaaagtgtaatgacaca-aagagaattttagcatggaaaac |
54979950 |
T |
|
| Q |
800 |
cttctcaatgcgagtaagg-aaaaaccacgggacccgtaggcctctt--aaatctccactataataataatgggaatacaa-atcttcaccctcaggtgg |
895 |
Q |
| |
|
||||||||| ||| |||| |||||||||||||||| | |||||||| ||| ||||||||||| ||||||||||||||| | ||||||||| |||||| |
|
|
| T |
54979951 |
cttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcacccttaggtgg |
54980050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 780 - 896
Target Start/End: Original strand, 18556392 - 18556511
Alignment:
| Q |
780 |
aaaattttagcgtggaaagccttctcaatgcgagtaagg--aaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaa |
877 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||| |||| |||||||||||||||| |||||||||| ||||||||||| | |||| |||||||| |
|
|
| T |
18556392 |
aaaattttagcgtggaaaaccttctcaatctgagaaaggcaaaaaaccacgggaccctcgagcctcttaaacttccactataatgacaatgagaatacaa |
18556491 |
T |
|
| Q |
878 |
-atcttcaccctcaggtgga |
896 |
Q |
| |
|
| ||||||||| ||||||| |
|
|
| T |
18556492 |
caacttcacccttaggtgga |
18556511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 851 - 922
Target Start/End: Original strand, 31725346 - 31725417
Alignment:
| Q |
851 |
tccactataataataatgggaatacaaatcttcaccctcaggtggacctaactatgtaactcaatttgtaga |
922 |
Q |
| |
|
|||| ||||| ||||||| |||||||||||||||| || |||||||||| || ||||| ||||||||||||| |
|
|
| T |
31725346 |
tccaatataacaataatgagaatacaaatcttcacacttaggtggaccttacgatgtatctcaatttgtaga |
31725417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 699 - 751
Target Start/End: Complemental strand, 17645981 - 17645928
Alignment:
| Q |
699 |
tgttgggaaatg-cctgcttaatttccctcctccgtgaactcaaaataggcact |
751 |
Q |
| |
|
|||||||||||| ||| | ||||||||||| |||||||||||||||||| |||| |
|
|
| T |
17645981 |
tgttgggaaatgacctccataatttccctcatccgtgaactcaaaatagacact |
17645928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 4e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 699 - 914
Target Start/End: Original strand, 29706854 - 29707069
Alignment:
| Q |
699 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaag |
798 |
Q |
| |
|
|||||| |||||||| | ||||||| ||| |||||||||| |||||| |||||||||| ||| ||||||||||||||||||||||||||| | ||||| |
|
|
| T |
29706854 |
tgttggaaaatgcctccataatttctctcatccgtgaacttaaaatatgcactttagcaaaaatgtaaaatgacacacaacaaaattttagtgaggaaaa |
29706953 |
T |
|
| Q |
799 |
ccttctcaatgcgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
898 |
Q |
| |
|
|||||||||| |||||||||| || |||||||| | ||| |||||||||||||||||||||||||||||| | | |||||||||||||| |||||||| |
|
|
| T |
29706954 |
ccttctcaatatgagtaaggaacaatcacgggactcatagacctcttaaatctccactataataataatggaataaaaaatcttcaccctcgggtggacc |
29707053 |
T |
|
| Q |
899 |
taactatgtaactcaa |
914 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
29707054 |
taactatgtatctcaa |
29707069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 782 - 874
Target Start/End: Complemental strand, 27642225 - 27642132
Alignment:
| Q |
782 |
aattttagcgtggaaagccttctcaatgcgagtaaggaaaaac-cacgggacccgtaggcctcttaaatctccactataataataatgggaata |
874 |
Q |
| |
|
|||||| ||||| ||| ||||||||||| ||| ||||||||| |||||| || || |||||||| |||||||||||||||||||||||| |
|
|
| T |
27642225 |
aattttggcgtgtaaaaccttctcaatgtgagaaaggaaaaaatcacggggtcctcgggtctcttaaacttccactataataataatgggaata |
27642132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 78; Significance: 8e-36; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 717 - 877
Target Start/End: Original strand, 26516 - 26674
Alignment:
| Q |
717 |
taatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaagccttctcaatgcgagtaa |
816 |
Q |
| |
|
|||| |||||||| |||||||||||||||| |||||||||| ||||||||||| |||| ||||||||||||| ||||||| |||| |||||| |||||| |
|
|
| T |
26516 |
taatctccctccttcgtgaactcaaaatagacactttagcgaaaacgtaaaataacac--aacaaaattttagggtggaaaaccttttcaatgtgagtaa |
26613 |
T |
|
| Q |
817 |
ggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaa |
877 |
Q |
| |
|
|||||||| ||||||||| | ||||||||||| |||||| |||| |||| | |||||||| |
|
|
| T |
26614 |
ggaaaaactacgggacccttgggcctcttaaacttccactctaatgataacgagaatacaa |
26674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 5e-31; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 698 - 896
Target Start/End: Original strand, 4842647 - 4842857
Alignment:
| Q |
698 |
ctgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaattt |
786 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| || | ||||| |
|
|
| T |
4842647 |
ctgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcac--tagcggaaacgtgaaatataagtgtaatgacaca-aagagaattt |
4842743 |
T |
|
| Q |
787 |
tagcgtggaaagccttctcaatgcgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atctt |
882 |
Q |
| |
|
||||||||||| ||||||||||| ||| |||| ||||||||| |||||| | ||||||||||| | ||||||||||| ||||| ||||||||| | ||| |
|
|
| T |
4842744 |
tagcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacaggacccttgggcctcttaaaacttccactataatgataataggaatacaacaactt |
4842843 |
T |
|
| Q |
883 |
caccctcaggtgga |
896 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
4842844 |
cacccttaggtgga |
4842857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 699 - 877
Target Start/End: Original strand, 25857131 - 25857317
Alignment:
| Q |
699 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
787 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||| |||| |||||| | |||||| |
|
|
| T |
25857131 |
tgttgggaaatgcctgcataatttccctcctccgtgaacttaaaataggcact--agcggaaacgtgaaatataagcgtaatgacacagag---aatttt |
25857225 |
T |
|
| Q |
788 |
agcgtggaaagccttctcaatgcgagtaa-ggaaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa |
877 |
Q |
| |
|
|||||||||| ||||||||||| ||| || |||||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
25857226 |
agcgtggaaaaccttctcaatgtgagaaaaggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaa |
25857317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 699 - 896
Target Start/End: Original strand, 4835575 - 4835782
Alignment:
| Q |
699 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatg-acac------aca-acaaaattttagc |
790 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||| || |||||||| |||| | || ||| | | ||||||||| |
|
|
| T |
4835575 |
tgttgggaaatgcctgcataatttccctcctccatgaactcaaaataggcact--agtggaaacgtgaaatataaacgtaatgacacagagaattttagc |
4835672 |
T |
|
| Q |
791 |
gtggaaagccttctcaatgcgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc |
886 |
Q |
| |
|
||||||| ||||||||||| ||| |||| |||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||| ||| | ||||||| |
|
|
| T |
4835673 |
gtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttcacc |
4835772 |
T |
|
| Q |
887 |
ctcaggtgga |
896 |
Q |
| |
|
|| ||||||| |
|
|
| T |
4835773 |
cttaggtgga |
4835782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 780 - 896
Target Start/End: Original strand, 13465046 - 13465165
Alignment:
| Q |
780 |
aaaattttagcgtggaaagccttctcaatgcgagtaa-ggaaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa |
877 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||| || ||||||||||| |||||| | ||||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
13465046 |
aaaattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacaggacccttgggcctcttaaaacatccactataatgataatgggaatacaa |
13465145 |
T |
|
| Q |
878 |
-atcttcaccctcaggtgga |
896 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
13465146 |
caagttcaccctcaggtgga |
13465165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 773 - 894
Target Start/End: Complemental strand, 17845969 - 17845847
Alignment:
| Q |
773 |
acacaacaaaattttagcgtggaaagccttctcaatgcgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaa |
872 |
Q |
| |
|
|||||| | |||||||| ||||||| ||||| ||||| ||| ||||||||||||| ||||| | | ||||||||| ||||||||||| ||||||| || |
|
|
| T |
17845969 |
acacaagagaattttagagtggaaaaccttcccaatgtgaggaaggaaaaaccacaggacctttggacctcttaaacttccactataatgataatggaaa |
17845870 |
T |
|
| Q |
873 |
tacaa-atcttcaccctcaggtg |
894 |
Q |
| |
|
||||| | ||||||||| ||||| |
|
|
| T |
17845869 |
tacaacaacttcacccttaggtg |
17845847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 699 - 749
Target Start/End: Complemental strand, 24380163 - 24380113
Alignment:
| Q |
699 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggca |
749 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
24380163 |
tgttgggaaatgcctgcataatttccctcctctgtgaactcaaaataggca |
24380113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 782 - 896
Target Start/End: Original strand, 24379370 - 24379487
Alignment:
| Q |
782 |
aattttagcgtggaaagccttctcaatgcgagtaa-ggaaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-a |
878 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||| || ||||||||||||||| | | ||||||||||| | ||||||||||| ||||| ||||||||| | |
|
|
| T |
24379370 |
aattttaacgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggatctttgggcctcttaaaacttccactataatgataataggaatacaaca |
24379469 |
T |
|
| Q |
879 |
tcttcaccctcaggtgga |
896 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
24379470 |
acttcacccttaggtgga |
24379487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 782 - 877
Target Start/End: Original strand, 27341025 - 27341120
Alignment:
| Q |
782 |
aattttagcgtggaaagccttctcaatgcgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaa |
877 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||||||||||||||||||| | ||||||||| || |||| ||| ||||||| ||||||| |
|
|
| T |
27341025 |
aattttagcgtggaaaaccttctcaatgtaagaaaggaaaaaccacgggacccttgtacctcttaaacttctactacaatgataatggaaatacaa |
27341120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 782 - 834
Target Start/End: Original strand, 38994151 - 38994204
Alignment:
| Q |
782 |
aattttagcgtggaaagccttctcaatgcgagtaa-ggaaaaaccacgggaccc |
834 |
Q |
| |
|
||||||| |||||||| ||||||||||||||| || |||||||||||||||||| |
|
|
| T |
38994151 |
aattttaacgtggaaaaccttctcaatgcgagaaagggaaaaaccacgggaccc |
38994204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 694 - 769
Target Start/End: Original strand, 24379274 - 24379347
Alignment:
| Q |
694 |
aattctgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat |
769 |
Q |
| |
|
|||| |||||| ||||| || | ||||||| |||||||||||||| ||||||||||| ||| ||||||||||||| |
|
|
| T |
24379274 |
aattgtgttggaaaatgtctacataatttctctcctccgtgaacttaaaataggcac--tagtggaaacgtaaaat |
24379347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 2e-30; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 699 - 896
Target Start/End: Complemental strand, 41481815 - 41481606
Alignment:
| Q |
699 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
787 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||| || | |||||| |
|
|
| T |
41481815 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt |
41481719 |
T |
|
| Q |
788 |
agcgtggaaagccttctcaatgcgagtaagg--aaaaaccacgggacccgtaggcctcttaaatct-ccactataataataatgggaatacaa-atcttc |
883 |
Q |
| |
|
|||||||||| |||||||||| ||| |||| |||||||||||||||| | ||||||||||| || |||||||||| ||||||||||||||| | |||| |
|
|
| T |
41481718 |
agcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc |
41481619 |
T |
|
| Q |
884 |
accctcaggtgga |
896 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
41481618 |
acccttaggtgga |
41481606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 699 - 905
Target Start/End: Complemental strand, 36167813 - 36167596
Alignment:
| Q |
699 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaatttt |
787 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| || | |||||| |
|
|
| T |
36167813 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcac--tagcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt |
36167717 |
T |
|
| Q |
788 |
agcgtggaaagccttctcaatgcgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
883 |
Q |
| |
|
|||||||||| |||||||||| ||| |||| ||||||||| |||||| | ||||||||||| | ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
36167716 |
agcgtggaaaaccttctcaatatgagaaagggaaaaaaccac-ggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc |
36167618 |
T |
|
| Q |
884 |
accctcaggtggacctaactat |
905 |
Q |
| |
|
||||| ||||||| || ||||| |
|
|
| T |
36167617 |
acccttaggtggatctcactat |
36167596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 704 - 893
Target Start/End: Original strand, 18951129 - 18951326
Alignment:
| Q |
704 |
ggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat------gacacacaacaaaattttagcgtggaaa |
797 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||| | |||| | | ||| ||||||||| |||||| |
|
|
| T |
18951129 |
ggaaatgcctgcataatttgcctcctccgtgaactcaaaataggcac--tagcggaaacatgaaatataagcgtaatgacacagaattttagcatggaaa |
18951226 |
T |
|
| Q |
798 |
gccttctcaatgcgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttcaccctcaggt |
893 |
Q |
| |
|
||||||||||| ||| |||| |||||||||| |||| | ||| ||||||| | ||||||||||| ||||||||||||||| | ||||||||| |||| |
|
|
| T |
18951227 |
accttctcaatgtgagaaagggaaaaaaccacgagacctttgggcttcttaaaacttccactataatgataatgggaatacaacaacttcacccttaggt |
18951326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 699 - 896
Target Start/End: Complemental strand, 2936 - 2727
Alignment:
| Q |
699 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
787 |
Q |
| |
|
||||||||||||| ||| |||||||||| ||||||||||||||||||| |||| ||||||||||| |||| |||||| || | |||||| |
|
|
| T |
2936 |
tgttgggaaatgcatgcataatttcccttctccgtgaactcaaaatagacact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaatttt |
2840 |
T |
|
| Q |
788 |
agcgtggaaagccttctcaatgcgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
883 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||| |||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
2839 |
agcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc |
2740 |
T |
|
| Q |
884 |
accctcaggtgga |
896 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
2739 |
acccttaggtgga |
2727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 4e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 698 - 905
Target Start/End: Original strand, 9757211 - 9757431
Alignment:
| Q |
698 |
ctgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattt |
786 |
Q |
| |
|
||||||| |||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||| |||||| || | ||||| |
|
|
| T |
9757211 |
ctgttggtaaatgcctgcataatttccttcctccgtgaactcaaaataggcact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaattt |
9757307 |
T |
|
| Q |
787 |
tagcgtggaaagccttctcaatgcgagtaagg-aaaaaccacgggacccgtaggcctcttaaatc---tccactataataataatgggaatacaa-atct |
881 |
Q |
| |
|
||||||||||| ||||||||||| ||| |||| |||||||||||||||| | ||||||||||| ||||||||||| ||||||||||||||| | || |
|
|
| T |
9757308 |
tagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaaaacttccactataatgataatgggaatacaacaact |
9757407 |
T |
|
| Q |
882 |
tcaccctcaggtggacctaactat |
905 |
Q |
| |
|
||||||| ||||||| || ||||| |
|
|
| T |
9757408 |
tcacccttaggtggatctcactat |
9757431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 782 - 894
Target Start/End: Original strand, 42682924 - 42683038
Alignment:
| Q |
782 |
aattttagcgtggaaagccttctcaatgcgagtaaggaaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-at |
879 |
Q |
| |
|
||||| |||||||||| ||||||||||| ||| ||||||||| |||||||||| | | ||||||||| | ||||||||||| ||||||||||||||| | |
|
|
| T |
42682924 |
aatttcagcgtggaaaaccttctcaatgtgagaaaggaaaaatcacgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaa |
42683023 |
T |
|
| Q |
880 |
cttcaccctcaggtg |
894 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
42683024 |
cttcacccttaggtg |
42683038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 780 - 877
Target Start/End: Original strand, 37286972 - 37287069
Alignment:
| Q |
780 |
aaaattttagcgtggaaagccttctcaatgcgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaa |
877 |
Q |
| |
|
||||||||||| |||||| ||||||||||| || ||||||||| |||||||||| || || ||||||| ||||||||||||||||| |||||||| |
|
|
| T |
37286972 |
aaaattttagcatggaaaaccttctcaatgtgaaaaaggaaaaatcacgggacccttaagcatcttaaacttccactataataataataagaatacaa |
37287069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 698 - 751
Target Start/End: Original strand, 342216 - 342269
Alignment:
| Q |
698 |
ctgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcact |
751 |
Q |
| |
|
||||||| |||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
342216 |
ctgttggaaaatgcctgcataattttcctcctccgtgaactcaaaataggcact |
342269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 782 - 877
Target Start/End: Original strand, 342306 - 342404
Alignment:
| Q |
782 |
aattttagcgtggaaagccttctcaatgcgagtaa-ggaa-aaaccacgggacccgtaggcctcttaaatct-ccactataataataatgggaatacaa |
877 |
Q |
| |
|
|||||||||||| ||| |||||||||| ||| || |||| ||||||||||| || | ||||||||||| || |||||||||| ||||||||||||||| |
|
|
| T |
342306 |
aattttagcgtgaaaaaccttctcaatatgagaaatggaagaaaccacgggatccttgggcctcttaaaacttccactataatgataatgggaatacaa |
342404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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