View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5220-Insertion-12 (Length: 210)
Name: NF5220-Insertion-12
Description: NF5220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5220-Insertion-12 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 1452804 - 1452997
Alignment:
| Q |
8 |
ggttaccctcgaatagcccataagatgcagcaggtacgacgtttaatcaaatgtcgtatattgttgctaaagaaaaagtgttttctcacaaaccatcaat |
107 |
Q |
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| T |
1452804 |
ggttaccctcgaatagcccataagatgcagcaggtacgacgtttaatcaaatgtcgtatattgttactaaagaaaaagtgttttctcacaaaccatcaat |
1452903 |
T |
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| Q |
108 |
caaatttgagttttgttgaaactgttaacctccctttagcaataattattgctatttatcaaagagttgaattttcttcagtgaatctagactt |
201 |
Q |
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| T |
1452904 |
caaatttgagttttgttgaaactgttaacctccctttagcaataattattgctatttatcaaagagttgaattttcttcagtgaatctagactt |
1452997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 1464496 - 1464689
Alignment:
| Q |
8 |
ggttaccctcgaatagcccataagatgcagcaggtacgacgtttaatcaaatgtcgtatattgttgctaaagaaaaagtgttttctcacaaaccatcaat |
107 |
Q |
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| T |
1464496 |
ggttaccctcgaatagcccataagatgcagcaggtacgacgtttaatcaaatgtcgtatattgttactaaagaaaaagtgttttctcacaaaccatcaat |
1464595 |
T |
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| Q |
108 |
caaatttgagttttgttgaaactgttaacctccctttagcaataattattgctatttatcaaagagttgaattttcttcagtgaatctagactt |
201 |
Q |
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| T |
1464596 |
caaatttgagttttgttgaaactgttaacctccctttagcaataattattgctatttatcaaagagttgaattttcttcagtgaatctagactt |
1464689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 160
Target Start/End: Complemental strand, 3599122 - 3599029
Alignment:
| Q |
63 |
gtatattgttgctaaagaaaaagtgttttctcacaaaccatcaatcaaatttgagttttgttgaaactgttaacctccctttagcaataattattgct |
160 |
Q |
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| T |
3599122 |
gtatactgttgctgaagaaaaagtacttgctcacaagccatcaa----atttgagttttgttgaagctgctagtctccctttagcaataattactgct |
3599029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 160
Target Start/End: Complemental strand, 3603294 - 3603201
Alignment:
| Q |
63 |
gtatattgttgctaaagaaaaagtgttttctcacaaaccatcaatcaaatttgagttttgttgaaactgttaacctccctttagcaataattattgct |
160 |
Q |
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| T |
3603294 |
gtatactgttgctgaagaaaaagtacttgctcacaaaccatcaa----atttgagttttgttgaagctgctagtctccctttagcaatcattactgct |
3603201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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