View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5220-Insertion-2 (Length: 752)

Name: NF5220-Insertion-2
Description: NF5220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5220-Insertion-2
NF5220-Insertion-2
[»] chr1 (1 HSPs)
chr1 (7-693)||(40690621-40691311)


Alignment Details
Target: chr1 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 7 - 693
Target Start/End: Original strand, 40690621 - 40691311
Alignment:
Q  7 aagggggttatggttattggtacaatcttaaaaatctttgtttaagtttccattgttttgttgtctacaaaaaaggttgcctcctctctctatctaaatg 106  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40690621 aagggggttatagttattggtacaatcttaaaaatctttgtttaagtttccattgttttgttgtctacaaaaaaggttgcctcctctctctatctaaatg 40690720  T
Q  107 ttctgtctttgtttctctctctgt------gtgggtcccctcccattgtacacggata-agaataaaagtatggaaagccagtaagtaactgctattccc 199  Q
    |||||||||||| ||||||||| |      ||| ||||||||  ||||  || ||||| ||||||||||||||             ||||||||||||||    
T  40690721 ttctgtctttgtctctctctctctctctctgtgtgtcccctcatattggtcatggatatagaataaaagtatg-------------taactgctattccc 40690807  T
Q  200 atatgaattctcatggtgtccnnnnnnncctttactaatct--gttgtcatttaatatagattatgattgaaatctaaagagatgattagattttttctg 297  Q
    |||||||||||||||||||||       ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40690808 atatgaattctcatggtgtcctttttttcctttactaatatatgttgtcatttaatatagattatgattgaaatctaaagagatgattagattttttctg 40690907  T
Q  298 ttttaattaatttagattaagggaggcacacttgatgcaagtgaaagataatcatacttttccaagatttagaatgaaattgacatataatctaccgacg 397  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  40690908 ttttaattaatttagattaagggaggcacacttgatacaagtgaaagataatcatacttttccaagatttagaatgaaattgaaatataatctaccgagg 40691007  T
Q  398 acagaatttcggtcttgaacctaagttacagtaagggatgtcaacagggc-aggcagcggagta-------nnnnnnngcttcccgtccctagcacccaa 489  Q
    ||| ||||||||||||||||||||||||||||||| ||||||||| |||| ||| || ||||||               | |||||||||||||||||||    
T  40691008 acaaaatttcggtcttgaacctaagttacagtaagcgatgtcaacggggcaaggaaggggagtatcccccccccccccccctcccgtccctagcacccaa 40691107  T
Q  490 aatgctccatccatgtcctctccgtctcggggagtttttctctctatcctcatcgttgtggattccggcccatgtaggaatccatcaatatataaaataa 589  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40691108 aatgctccatccatgtcctctccgtctcggggagtttttctctctatcctcatcgttgtggattccggtccatgtaggaatccatcaatatataaaataa 40691207  T
Q  590 taatcaannnnnnnnagtaaatgtacgtataaagtttattttagtaaactctatgggaccatataatttttgtctctaaactattctccggttaactttc 689  Q
    |||||||        ||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40691208 taatcaattttttttagtaaatgtacgtatgaagcttattttagtaaactgtatgggaccatataatttttgtctctaaactattctctggttaactttc 40691307  T

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