View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5220-Insertion-3 (Length: 596)
Name: NF5220-Insertion-3
Description: NF5220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5220-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 8 - 477
Target Start/End: Complemental strand, 36275223 - 36274755
Alignment:
| Q |
8 |
aatttggagtgacgacttttataaatcttactattgactctacaaacaataggcactaatgagaggaggaccagcaacataaggcatgcatcggtttggc |
107 |
Q |
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| T |
36275223 |
aatttggagtgacgacttttataaatcttactattgactctacaaacaataggcactaatgagaggaggaccagcaacataagacatgcatcggtttggc |
36275124 |
T |
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| Q |
108 |
actgtcctgttaccatcacaaagatcactggaaatctgaaaacgatatataataattgcatggatgctcattacctcaaagaaaaagaaaatccaccaaa |
207 |
Q |
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| T |
36275123 |
actgtcctgttaccatcacaaagatcactggaaatctgaaaacgatatataataattgcatggatgctcattacctcaaagaaaaagaaaatccaccaaa |
36275024 |
T |
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| Q |
208 |
ttaccaagagcagcaaatgttaatttattgtttgtattttgtaactaatagaaagcaactgaacaattttaaaagtggaaactaaatcacatatttagcc |
307 |
Q |
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| T |
36275023 |
ttaccaagagcagcaaatgttaatttattgtttgtattttgtaactaatagaaagcaactgaacaattttaaaagtggaaactaaatcacatatttagcc |
36274924 |
T |
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| Q |
308 |
gaaaagtttataatcaaaacacnnnnnnnnnnnnnntcaagtttgagaaacagccattaaatatggtacaagggcctaagaagtgcttattatgctaatc |
407 |
Q |
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| T |
36274923 |
gaaaagtttataatcaaaacac-aaaaaaaaaaaaatcaagtttgagaaacagccattaaatatggtacaagggcctaagaagtgcttattatgctaatc |
36274825 |
T |
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| Q |
408 |
cttgagtcttgttctgcacgcctttaatttaattgtcccctggtttccttccttggtccagtggtacact |
477 |
Q |
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| T |
36274824 |
cttgagtcttgttctgcacgcctttaatttaattgtcccctggtttccttccttggtccagtggtacact |
36274755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 513 - 596
Target Start/End: Complemental strand, 36274719 - 36274636
Alignment:
| Q |
513 |
gtcctcaagaactgtcaacatttatctgttattataaatcttaccttacaccttccttgaactaatactccagttcttcctcca |
596 |
Q |
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| T |
36274719 |
gtcctcaagaactgtcaacatttatctgttattataaatcttaccttacaccttccttgaactaatactccagttcttcctcca |
36274636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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