View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5220-Insertion-4 (Length: 570)
Name: NF5220-Insertion-4
Description: NF5220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5220-Insertion-4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 167 - 570
Target Start/End: Original strand, 9118025 - 9118428
Alignment:
| Q |
167 |
gtataaagcattacaccaaccatatacactaagaattatatccacaaaatacagaagtgaattaagtttgagaagtgattcgaagtgattcggatttaaa |
266 |
Q |
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| T |
9118025 |
gtataaagcattacaccaaccatatacactaagaattatatccacaaaatacagaagtgaattaagtttgagaagtgattcgaagtgatttggatttaaa |
9118124 |
T |
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| Q |
267 |
cctatatctaggagctctaggaataacttgactaggacccatatgaaactgaccaggagtattaataagaggaggaccatcatcatatacataaccaaca |
366 |
Q |
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| T |
9118125 |
cctatatctaggagctctaggaataacttgactaggacccatatgaaactgaccaggagtattaataagaggaggaccatcatcatatacataaccaaca |
9118224 |
T |
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| Q |
367 |
agatgattacaattattacacttgatcttagttctctttctttgaattccccaatggttgattgtttcgaagaatggacggatcttatcttctttttcga |
466 |
Q |
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| T |
9118225 |
agatgattacaattattacacttgatcttagttctctttctttgaattccccaatagttgattgtttcgaagaatggacggatcttatcttctttttcga |
9118324 |
T |
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| Q |
467 |
atttgaacttggtagcgtcgatggtggagaaggagattgagtttttgtttccggcttcgaagtagaaatccggtgggtaagtgtaggaggtgttgaggtt |
566 |
Q |
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| T |
9118325 |
atttgaacttggtagcgtcgatggtggagaaggagattgagtttttgtttccggcttcgaagtagaaatccggtgggtaagtgtaggaggtgttgaggtt |
9118424 |
T |
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| Q |
567 |
gagg |
570 |
Q |
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| T |
9118425 |
gagg |
9118428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 9117867 - 9117927
Alignment:
| Q |
8 |
caaagttccaatgaacataattaagcttcaagatacatcatttacatggcacatgttttac |
68 |
Q |
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| T |
9117867 |
caaagttccaatgaacataattaagcttcaagatacatcatttacatggcacatgttttac |
9117927 |
T |
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