View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5220-Insertion-5 (Length: 570)
Name: NF5220-Insertion-5
Description: NF5220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5220-Insertion-5 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 30 - 570
Target Start/End: Original strand, 35733260 - 35733778
Alignment:
| Q |
30 |
atagtatcataccatggatattgtgaagataaagaaccggattcaatgttttaaacaacaagaaattgatagttggattaagagttagttttacctaatt |
129 |
Q |
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| T |
35733260 |
atagtatcataccatggatattgtgaagataaagaaccggattcaatgttttaaacaacaagaaattgatagttggattaagagttagttttacccaatt |
35733359 |
T |
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| Q |
130 |
gcaatgtcaatatcccaacttactccaacaaaataaggttaaactattcctcctgtcctgtaacaagtcaacacttggtctacattttaatcagccagag |
229 |
Q |
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| T |
35733360 |
gcattgtcaatatcc-aacttactccaacaaaataaggttaaactattcctcctgtcctgtaacaagtcaacacttggtctacattttaatcag------ |
35733452 |
T |
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| Q |
230 |
ccattttgatgtatgcacagtgcacaatgcacaatacgattaaaaagtttgagcaaagaaaataaggtaggatacatacaatnnnnnnngcaacctctct |
329 |
Q |
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| T |
35733453 |
-------gatgtatgcaca-------atgcacaatacgattaaaaagtttgagcaaagaaaataaggtaggatacatacaataaaaaa-gcaacctctct |
35733537 |
T |
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| Q |
330 |
tcaagttcactgagccagtaaatcacaaagacactcccnnnnnnnttaaattgtagcaatcatacactttattggaatttacataagtcatttgttaagg |
429 |
Q |
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| T |
35733538 |
tcaagttcactgagccagtaaatcacaaagacactcccaaaaaaattaaattgtagcaatcatacactttattggaatttacataagtcatttgttaagg |
35733637 |
T |
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| Q |
430 |
ctagctacaagtaatttgttaatttcattctaccaagcaagctgattgttaaaaaatttgtagcgatcacaaacgatgtaggaatttacatgaccaaaaa |
529 |
Q |
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| T |
35733638 |
ctagctacaagtaatttgttaatttcattctaccaagcaggctgattgttaaaaaatttgtagcgatcacaaacgatgtaggaatttacatgaccaaaaa |
35733737 |
T |
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| Q |
530 |
cagtttagaatagtttaggaagatcactttaccaacaacaa |
570 |
Q |
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| T |
35733738 |
cagtttagaatagtttaggaagatcactttaccaacaacaa |
35733778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 35755508 - 35755577
Alignment:
| Q |
41 |
ccatggatattgtgaagataaagaaccggattcaatgttttaaacaacaagaaattgatagttggattaag |
111 |
Q |
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| T |
35755508 |
ccatggatattgc-aagataaagaacgggattcaacgtttcaaagaacaatgaattgatagttggattaag |
35755577 |
T |
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