View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5220_high_1 (Length: 691)

Name: NF5220_high_1
Description: NF5220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5220_high_1
NF5220_high_1
[»] chr1 (2 HSPs)
chr1 (97-458)||(42780458-42780798)
chr1 (467-682)||(42781534-42781754)
[»] chr3 (1 HSPs)
chr3 (280-374)||(3171964-3172058)
[»] chr4 (2 HSPs)
chr4 (375-420)||(45546079-45546124)
chr4 (375-420)||(45550651-45550696)
[»] chr5 (2 HSPs)
chr5 (281-324)||(37550414-37550457)
chr5 (281-324)||(37653243-37653286)
[»] chr7 (1 HSPs)
chr7 (6-51)||(6888839-6888884)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 97 - 458
Target Start/End: Original strand, 42780458 - 42780798
Alignment:
Q  97 gttcgttgataataaaagtggaggaagacatgcactgtcttaacgttacttttgataaaattagtagtgagagtccatgagagataattnnnnnnnngtt 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||        |||    
T  42780458 gttcgttgataataaaagtggaggaagacatgcactgtcttaacgttacttttgataaaattagtagtgatagtccatgagagataattaaaaaaa-gtt 42780556  T
Q  197 ggtggtgatgaactataaactatatagtaaaactatattgtttttgtcaacnnnnnnnnnn-ctatattgtttttcactattcctgtcaatttggttctg 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||    
T  42780557 ggtggtgatgaactataaactatatagtaaaactatattgtttttgtcaacaaaaaaaaaaactatattgtttttcactattcctgtcaatttggttctg 42780656  T
Q  296 tttggacttaatgctagctaaaataaattcctactaggctaatgcagtagtttatctgttgaagaagtgcactatgataaagaagacagttgttgtatct 395  Q
    |||||||||||||||||||                     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42780657 tttggacttaatgctagct---------------------aatgcagtagtttatctgttgaagaagtgcactatgataaagaagacagttgttgtatct 42780735  T
Q  396 ttctggggtgatcttgcaactaacacttgtgttagagttgataattattgcatagctttggtg 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42780736 ttctggggtgatcttgcaactaacacttgtgttagagttgataattattgcatagctttggtg 42780798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 467 - 682
Target Start/End: Original strand, 42781534 - 42781754
Alignment:
Q  467 gagaagaggcaaacgag---gttagttgttcctgtggagactaa-tttctccttaaagacat--caaagatggaaatgctctttcttcttagttttaatt 560  Q
    ||||||| |||||||||   |||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  42781534 gagaagaagcaaacgagctggttagttgttcctgtggagactaaatttctccttaaagacatatcaaagatggaaatgctctttcttcttagttttaatt 42781633  T
Q  561 atgttttttatataaagattattagatagagttaatttaaagatctttcttcttttctccttttcttatatcagggttctattacattgctttgatcatg 660  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42781634 atgtttt-tatataaagattattagatagagttaatttaaagatctttcttctcttctccttttcttatatcagggttctattacattgctttgatcatg 42781732  T
Q  661 aataagatgaggaagatgatga 682  Q
    ||||||||||||||||| ||||    
T  42781733 aataagatgaggaagattatga 42781754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 280 - 374
Target Start/End: Original strand, 3171964 - 3172058
Alignment:
Q  280 tgtcaatttggttctgtttggacttaatgctagctaaaataaattcctactaggctaatgcagtagtttatctgttgaagaagtgcactatgata 374  Q
    |||||||| ||||||||||||||||||||||| ||||| |||| ||||||||| |||||  |||| ||||| |||| |||||||||||| |||||    
T  3171964 tgtcaattgggttctgtttggacttaatgctatctaaagtaaactcctactagcctaatctagtaatttatttgttaaagaagtgcactgtgata 3172058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 375 - 420
Target Start/End: Original strand, 45546079 - 45546124
Alignment:
Q  375 aagaagacagttgttgtatctttctggggtgatcttgcaactaaca 420  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||    
T  45546079 aagaagacagttgttgtgtctttgtggggtgatcttgcaactaaca 45546124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 375 - 420
Target Start/End: Original strand, 45550651 - 45550696
Alignment:
Q  375 aagaagacagttgttgtatctttctggggtgatcttgcaactaaca 420  Q
    |||||||||||||||||  |||| ||||||||||||||||||||||    
T  45550651 aagaagacagttgttgtgactttgtggggtgatcttgcaactaaca 45550696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 324
Target Start/End: Original strand, 37550414 - 37550457
Alignment:
Q  281 gtcaatttggttctgtttggacttaatgctagctaaaataaatt 324  Q
    ||||||||||||||||||||||||||||||| || || ||||||    
T  37550414 gtcaatttggttctgtttggacttaatgctatcttaagtaaatt 37550457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 324
Target Start/End: Original strand, 37653243 - 37653286
Alignment:
Q  281 gtcaatttggttctgtttggacttaatgctagctaaaataaatt 324  Q
    ||||||||||||||||||||||||||||||| || || ||||||    
T  37653243 gtcaatttggttctgtttggacttaatgctatcttaagtaaatt 37653286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 6888839 - 6888884
Alignment:
Q  6 ctagttcgtagtgaactgtatatgagttatgttccatcttcattca 51  Q
    |||||||||||||||||| |||||| || |||||||| ||||||||    
T  6888839 ctagttcgtagtgaactgaatatgatttctgttccattttcattca 6888884  T

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